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[186153_s_at]

Description T27A10.7 /REP_DB=WormBase Gene ID /WP=CE07556 /TR=Q22824 /GB=AAB52505.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 72      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 53      6grp_total > 70      4grp_total > 32      6grp_highest_sub > 03_04      6grp_cgc > 75      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 697
1 2 3 4 range
A 617.2
(-3)
P 		915.9
(-0.2)
P 		1250.6
(3)
P 		1218.3
(2.7)
P 		633
B 777.5
(-3)
P 		888.7
(-1.8)
P 		1314.3
(3)
P 		1204.8
(1.8)
P 		537
C 774
(-3)
P 		899.9
(-1.3)
P 		1223.4
(3)
P 		1165.8
(2.2)
P 		449
avr 722.9
(-3) 		901.5
(-1) 		1262.8
(3) 		1196.3
(2.3) 		540

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 660
1 2 3 4 5 6 range
A 648.1
(-3)
P 		781.7
(-1.6)
P 		1008.4
(0.8)
P 		1209.9
(3)
P 		774
(-1.7)
P 		747.5
(-1.9)
P 		562
B 564.4
(-3)
P 		760.5
(-1.2)
P 		1106.5
(1.9)
P 		1224
(3)
P 		849.4
(-0.4)
P 		770.6
(-1.1)
P 		660
C 596.2
(-3)
P 		737.8
(-1.5)
P 		1029.1
(1.5)
P 		1178.1
(3)
P 		719.1
(-1.7)
P 		870.7
(-0.2)
P 		582
avr 602.9
(-3) 		760
(-1.4) 		1048
(1.4) 		1204
(3) 		780.8
(-1.2) 		796.3
(-1.1) 		601
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 224.7
(-1.1)
P 		198.8
(-2.2)
P 		326.9
(3)
P 		178.3
(-3)
P 		149
B 247.9
(-1)
P 		219.5
(-3)
P 		304.6
(3)
P 		256.7
(-0.4)
P 		85
C 256.2
(-1.4)
P 		258.7
(-1.4)
P 		426.4
(3)
P 		196.6
(-3)
P 		230
avr 242.9
(-1.6) 		225.7
(-2.4) 		352.6
(3) 		210.5
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 119.5
(-3)
P 		278
(2.1)
P 		219.6
(0.2)
P 		306.9
(3)
P 		233.5
(0.6)
P 		182
(-1)
P 		187
B 196.4
(-3)
P 		253.1
(-0.7)
P 		268.7
(-0.1)
P 		324.2
(2.2)
P 		345.1
(3)
P 		287.3
(0.7)
P 		149
C 221
(-3)
P 		225.1
(-2.7)
P 		261.9
(0.5)
P 		236.9
(-1.6)
P 		232.7
(-2)
P 		291.5
(3)
P 		71
avr 179
(-3) 		252.1
(1) 		250.1
(0.9) 		289.3
(3) 		270.4
(2) 		253.6
(1.1) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186153_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18217
Sequence Type Exemplar sequence
Representative Public ID T27A10.7 NCBI
Target Description T27A10.7 /REP_DB=WormBase Gene ID /WP=CE07556 /TR=Q22824 /GB=AAB52505.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076217(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076217 NCBI Caenorhabditis elegans CRAL/TRIO and GOLD domain suppressor of activated Ras family member (cgr-1) (cgr-1) mRNA, complete cds. 11/11 None
SNAP00000016184 ENSEMBL cdna:SNAP chromosome:CEL140:X:3597408:3600442:-1 11/11 None
GENEFINDER00000016187 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3597408:3600442:-1 11/11 None
T27A10.7 ENSEMBL cdna:known chromosome:CEL140:X:3597289:3600444:-1 gene:T27A10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3597408-3600443(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cgr-1
Ensembl T27A10.7
Entrez Gene 180650 Entrez gene
SwissProt Q22824 EMBL-EBI
WormBase CE37679 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52505 Hypothetical protein T27A10.7 [Caenorhabditis elegans] ref|NP_508618.2| CRAL/TRIO and GOLD domain suppressor of activated Ras family member (cgr-1) [Caenorhabditis elegans] 0.0
blast CAE68450 Hypothetical protein CBG14240 [Caenorhabditis briggsae] 1.0E-172
blast CAA91418 Hypothetical protein T13H5.2 [Caenorhabditis elegans] ref|NP_495795.1| T13H5.2 [Caenorhabditis elegans] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR001251 EMBL-EBI Cellular retinaldehyde-binding)/triple function, C-terminal 1.2E-13
Sequence
Target Sequence 
>C. ELEGANS:186153_S_AT
aactcttccaactctgtatttctgaaaccgaaatgtcattcaaaataattcgccaaaccg
aacaagaaaccgaacgtaaaatgggtgtgatcattatcatggatcttgatggttttagca
tggatcttttgtacactcctactcttaaagtgtacatgagcttgcttaccatgttgcaga
acattttccccgactttgctcgcagaatttatataatcaactgtcccgcaatgatgtcag
cggtttacgcgatggtatcgcctgttttgtcgtctcaaacaagggaaaaggtatttgcca
ttcttagccagtatgctgactctcacaaacttgaaggagaccgaaccaaaattgctgttc
cagcgaggtcgaaaactgagataaaaatgtacggagaaagcggaaagtatttccattggc
tatggcgtgttagcagtggagacatcgactttagcattgagaaggacggccgagtagtct
ggccagttttccgctgcctcacagagtttcatccggaaattggatccttcaaaattgagg
aaactggggaatatgtgttcattttcaacaattcgcatggaacattcttcggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCTTCCAACTCTGTATTTCTGA 71 141 413 Antisense
ATGGATCTTTTGTACACTCCTACTC 645 51 532 Antisense
ATGAGCTTGCTTACCATGTTGCAGA 554 45 568 Antisense
ATGTTGCAGAACATTTTCCCCGACT 177 47 583 Antisense
TCAACTGTCCCGCAATGATGTCAGC 420 631 629 Antisense
GATGTCAGCGGTTTACGCGATGGTA 569 409 645 Antisense
TCGCCTGTTTTGTCGTCTCAAACAA 483 599 670 Antisense
GTATGCTGACTCTCACAAACTTGAA 157 455 723 Antisense
GTGGAGACATCGACTTTAGCATTGA 306 491 848 Antisense
CTGCCTCACAGAGTTTCATCCGGAA 58 237 906 Antisense
ATTCGCATGGAACATTCTTCGGCAA 338 9 983 Antisense
Sequence Source Affymetrix Proprietary Database