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[186152_s_at]

Description Y81B9A.2 /REP_DB=WormBase Gene ID /WP=CE24679 /TR=Q9N4P7 /GB=AAF60882.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 1.2
(-3)
A 		3.8
(-2.7)
A 		6.4
(-2.3)
A 		47.4
(3)
M 		46
B 10.2
(-0.9)
A 		6
(-2.2)
A 		3.6
(-3)
A 		22.4
(3)
A 		19
C 1.4
(-3)
A 		3.7
(-2.6)
A 		2.2
(-2.9)
A 		38.2
(3)
A 		37
avr 4.3
(-3) 		4.5
(-2.9) 		4.1
(-3) 		36
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 6.2
(-0.6)
A 		13
(2.6)
A 		12.9
(2.6)
A 		1.1
(-3)
A 		3.6
(-1.8)
A 		13.8
(3)
A 		13
B 2.8
(-2.8)
A 		1.5
(-3)
A 		33.9
(3)
A 		3.2
(-2.7)
A 		4.7
(-2.4)
A 		6.5
(-2.1)
A 		32
C 2.1
(-2.7)
A 		2.8
(-2.5)
A 		3.9
(-2.2)
A 		23.2
(3)
A 		1
(-3)
A 		1.7
(-2.8)
A 		22
avr 3.7
(-2.7) 		5.8
(-1.8) 		16.9
(3) 		9.2
(-0.3) 		3.1
(-3) 		7.3
(-1.2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.4
(-3)
A 		0.8
(-2.6)
A 		1.7
(-1.8)
A 		6.9
(3)
M 		7
B 3.3
(0.8)
A 		1.5
(-2)
A 		0.8
(-3)
A 		4.8
(3)
A 		4
C 0.5
(-3)
A 		1.1
(-2.4)
A 		0.8
(-2.7)
A 		6.4
(3)
A 		6
avr 1.4
(-2.6) 		1.1
(-3) 		1.1
(-3) 		6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.2
(-1.7)
A 		4.6
(3)
A 		2.8
(0.5)
A 		0.3
(-3)
A 		1.1
(-1.9)
A 		3.4
(1.3)
A 		4
B 1
(-2.6)
A 		0.5
(-3)
A 		8.2
(3)
A 		0.9
(-2.7)
A 		1.9
(-1.9)
A 		2.4
(-1.5)
A 		8
C 0.8
(-2.3)
A 		0.9
(-2.2)
A 		1
(-2)
A 		4.7
(3)
A 		0.3
(-3)
A 		0.6
(-2.6)
A 		4
avr 1
(-3) 		2
(-1) 		4
(3) 		2
(-1) 		1.1
(-2.8) 		2.1
(-0.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186152_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16250
Sequence Type Exemplar sequence
Representative Public ID Y81B9A.2 NCBI
Target Description Y81B9A.2 /REP_DB=WormBase Gene ID /WP=CE24679 /TR=Q9N4P7 /GB=AAF60882.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077149(11), NM_077706(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077149 NCBI Caenorhabditis elegans Y81B9A.2 (Y81B9A.2) mRNA, complete cds. 11/11 None
NM_077706 NCBI Caenorhabditis elegans R09A8.1 (R09A8.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000033320 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9184096:9191353:1 11/11 None
SNAP00000033314 ENSEMBL cdna:SNAP chromosome:CEL140:X:9189893:9191021:1 11/11 None
SNAP00000001736 ENSEMBL cdna:SNAP chromosome:CEL140:X:12612648:12617801:1 11/11 None
GENEFINDER00000001746 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12612648:12617801:1 11/11 None
Y81B9A.2 ENSEMBL cdna:known chromosome:CEL140:X:9184096:9190650:1 gene:Y81B9A.2 11/11 None
R09A8.1 ENSEMBL cdna:known chromosome:CEL140:X:12612648:12617801:1 gene:R09A8.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9184094-9190649(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y81B9A.2
R09A8.1
Entrez Gene 187722 Entrez gene
190745 Entrez gene
SwissProt Q21852 EMBL-EBI
Q9N4P7 EMBL-EBI
WormBase CE03537 Wormbase
CE24679 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92003 Hypothetical protein R09A8.1 [Caenorhabditis elegans] ref|NP_510107.1| R09A8.1 [Caenorhabditis elegans] 0.0
blast AAF60882 Hypothetical protein Y81B9A.2 [Caenorhabditis elegans] ref|NP_509550.1| Y81B9A.2 [Caenorhabditis elegans] 1.0E-153
blast AAF60882 Hypothetical protein Y81B9A.2 [Caenorhabditis elegans] ref|NP_509550.1| Y81B9A.2 [Caenorhabditis elegans] 1.0E-130
blast CAA92019 Hypothetical protein T24D5.5 [Caenorhabditis elegans] ref|NP_510106.1| T24D5.5 [Caenorhabditis elegans] 1.0E-101
Sequence
Target Sequence 
>C. ELEGANS:186152_S_AT
cccctcgagcggttgtctataagctccctgcaatcaagggctcaatgaaagatgcattct
cagctcacaaactgttgaaaaaatcgtacgcgaagccaattgtggacattagctctacgt
caggcgatagcgacccagaatggtggagtgatcgggagttgacgcctgatttgaacttaa
aacgagaacttttgttgaaaaaggcacgcttctcacggaaaaccttcgataaacgatctt
catacattgctcatttcaaaaaatcacatctggaaaactatttgaattcggatagtgata
cagtctccaatgaaaagccgaagacacttgctcagttgaagaattttagcaaatccaact
tggtggaatatcatccaagcatgtaccgcgatgttggggttgtcataatttttttctcaa
tttattattacgatttgaatagtttcaaagtaaactctgaaattgaaaaacaagataaaa
tcttccaggaatataaaaaatggatttttcagagcgttcaagaaagaagattcgtgtcaa
aagagtgtaccgaaccaaaagtgctgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCTCGAGCGGTTGTCTATAAGCT 511 261 224 Antisense
TTGTCTATAAGCTCCCTGCAATCAA 16 707 236 Antisense
AGCTCCCTGCAATCAAGGGCTCAAT 692 79 245 Antisense
TCTCAGCTCACAAACTGTTGAAAAA 383 611 281 Antisense
AATCGTACGCGAAGCCAATTGTGGA 191 163 305 Antisense
GCCAATTGTGGACATTAGCTCTACG 355 277 318 Antisense
TTAGCTCTACGTCAGGCGATAGCGA 231 653 332 Antisense
AATGGTGGAGTGATCGGGAGTTGAC 616 161 362 Antisense
GATAGTGATACAGTCTCCAATGAAA 313 425 514 Antisense
AATTTTAGCAAATCCAACTTGGTGG 623 173 565 Antisense
GTGTACCGAACCAAAAGTGCTGTCA 183 485 768 Antisense
Sequence Source Affymetrix Proprietary Database