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[186151_at]

Description ZK1055.5 /REP_DB=WormBase Gene ID /WP=CE18474 /TR=O76443 /GB=AAC19263.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.9
(-3)
A 		1.9
(-0.5)
A 		1.6
(-1.3)
A 		3.3
(3)
A 		2
B 1.2
(-2.6)
A 		1.9
(-1.5)
A 		0.9
(-3)
A 		4.9
(3)
A 		4
C 2.4
(-1.4)
A 		5.6
(3)
A 		1.2
(-3)
A 		5.1
(2.3)
A 		4
avr 1.5
(-2.4) 		3.1
(0.6) 		1.2
(-3) 		4.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 5.3
(-1)
A 		1.6
(-3)
A 		4.5
(-1.4)
A 		12.7
(3)
A 		2.5
(-2.5)
A 		6.4
(-0.4)
A 		11
B 2.4
(-2.7)
A 		2.4
(-2.7)
A 		1.3
(-3)
A 		22.6
(3)
A 		12
(0)
A 		3.7
(-2.3)
A 		21
C 3.2
(-2.1)
A 		15.5
(3)
A 		1.5
(-2.8)
A 		2.1
(-2.5)
A 		0.9
(-3)
A 		1.8
(-2.6)
A 		15
avr 3.6
(-2.3) 		6.5
(-0.6) 		2.4
(-3) 		12.5
(3) 		5.1
(-1.4) 		4
(-2) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.3
(-3)
A 		0.4
(0)
A 		0.4
(0)
A 		0.5
(3)
A 		0
B 0.4
(-1.5)
A 		0.5
(-0.8)
A 		0.2
(-3)
A 		1
(3)
A 		1
C 0.8
(-1)
A 		1.6
(3)
A 		0.4
(-3)
A 		0.9
(-0.5)
A 		1
avr 0.5
(-0.6) 		0.8
(3) 		0.3
(-3) 		0.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1
(-2.1)
A 		0.6
(-3)
A 		1
(-2.1)
A 		3.2
(3)
A 		0.7
(-2.8)
A 		1.6
(-0.7)
A 		3
B 0.8
(-2.5)
A 		0.8
(-2.5)
A 		0.3
(-3)
A 		6
(3)
A 		4.9
(1.8)
A 		1.4
(-1.8)
A 		6
C 1.2
(-1.8)
A 		4.7
(3)
A 		0.4
(-2.9)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		0.6
(-2.6)
A 		4
avr 1
(-2.1) 		2
(0.2) 		0.6
(-3) 		3.2
(3) 		2
(0.2) 		1.2
(-1.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186151_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11384
Sequence Type Exemplar sequence
Representative Public ID ZK1055.5 NCBI
Target Description ZK1055.5 /REP_DB=WormBase Gene ID /WP=CE18474 /TR=O76443 /GB=AAC19263.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072272(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072272 NCBI Caenorhabditis elegans ZK1055.5 (ZK1055.5) mRNA, complete cds. 11/11 None
SNAP00000018287 ENSEMBL cdna:SNAP chromosome:CEL140:V:6585491:6586984:1 10/11 None
GENEFINDER00000018293 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6583474:6586526:1 10/11 None
ZK1055.5 ENSEMBL cdna:known chromosome:CEL140:V:6583474:6586984:1 gene:ZK1055.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6583473-6586984(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1055.5
Entrez Gene 191514 Entrez gene
SwissProt O76443 EMBL-EBI
WormBase CE18474 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19263 Hypothetical protein ZK1055.5 [Caenorhabditis elegans] ref|NP_504673.1| ZK1055.5 [Caenorhabditis elegans] 0.0
blast AAC19263 Hypothetical protein ZK1055.5 [Caenorhabditis elegans] ref|NP_504673.1| ZK1055.5 [Caenorhabditis elegans] 1.0E-156
blast AAC19263 Hypothetical protein ZK1055.5 [Caenorhabditis elegans] ref|NP_504673.1| ZK1055.5 [Caenorhabditis elegans] 6.0E-97
blast CAE71911 Hypothetical protein CBG18973 [Caenorhabditis briggsae] 1.0E-95
blast CAE71911 Hypothetical protein CBG18973 [Caenorhabditis briggsae] 2.0E-92
blast CAE71911 Hypothetical protein CBG18973 [Caenorhabditis briggsae] 9.0E-77
blast AAB70361 Hypothetical protein K06H6.1 [Caenorhabditis elegans] ref|NP_503255.1| K06H6.1 [Caenorhabditis elegans] 1.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 1.0E-126
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 2.3E-112
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 4.3E-82
Sequence
Target Sequence 
>C. ELEGANS:186151_AT
tctggaatttccatgcattacgccatgaagagatattatctatctggaaagcgagggctt
gttctaggaagtgatcacccaatcgtagaagttcaagctatacaaaatggtaattatctc
aaaccgaataaaaataattttaaattgtcatttcaaggtgcttctcgaatattatccatt
ggacaggttgctagagaaacagaagacatttctacttcaagtctcacagactttgctaaa
aatttcaaaaaatttacgaatgcttttgattttgtcgcaagctacggggtcatcgagaca
gttggtttgggaaaatttggagatgttctggacgcgtttggagatcttcaaatgatggca
atgttgggatgttcattgaaaaaaggaggattgttctttcttggaatcccaattggaaga
gatgctttaattttcaatcagaaaagaatttacgggcatgcgaggttacccatgttgatt
gcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGGAATTTCCATGCATTACGCCA 460 607 514 Antisense
GTGATCACCCAATCGTAGAAGTTCA 491 481 584 Antisense
AATTGTCATTTCAAGGTGCTTCTCG 291 179 656 Antisense
GTGCTTCTCGAATATTATCCATTGG 661 479 671 Antisense
GACATTTCTACTTCAAGTCTCACAG 225 371 718 Antisense
TTTTGTCGCAAGCTACGGGGTCATC 547 613 783 Antisense
GGTCATCGAGACAGTTGGTTTGGGA 330 501 801 Antisense
TGGAGATGTTCTGGACGCGTTTGGA 495 549 831 Antisense
GATTGTTCTTTCTTGGAATCCCAAT 74 435 902 Antisense
GAATTTACGGGCATGCGAGGTTACC 703 137 959 Antisense
GCGAGGTTACCCATGTTGATTGCAG 263 289 973 Antisense
Sequence Source Affymetrix Proprietary Database