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[186149_at]

Description C15H9.10 /REP_DB=WormBase Gene ID /WP=CE06836 /TR=Q18027 /GB=AAB52669.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 63      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 71      6grp_total > 60      4grp_total > 0      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 366.1
(-3)
P 		381.3
(-2.6)
P 		380.4
(-2.6)
P 		591.7
(3)
P 		226
B 384.9
(-2.1)
P 		363.6
(-3)
P 		430.8
(-0.3)
P 		512.7
(3)
P 		149
C 417.8
(-0.3)
P 		345
(-3)
P 		421.7
(-0.2)
P 		509.7
(3)
P 		165
avr 389.6
(-2.1) 		363.3
(-3) 		411
(-1.4) 		538
(3) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 296
1 2 3 4 5 6 range
A 302.5
(-1.1)
P 		308.3
(-1)
P 		418.8
(1.4)
P 		496.4
(3)
P 		214.1
(-3)
P 		297.1
(-1.2)
P 		282
B 237.5
(-3)
P 		273.6
(-1.8)
P 		396.1
(2.5)
P 		410.8
(3)
P 		274.5
(-1.7)
P 		286.2
(-1.3)
P 		173
C 284.3
(0)
P 		222.3
(-2.2)
P 		364.7
(2.9)
P 		366.5
(3)
P 		200.6
(-3)
P 		294.2
(0.4)
P 		166
avr 274.8
(-1.6) 		268.1
(-1.8) 		393.2
(2) 		424.6
(3) 		229.7
(-3) 		292.5
(-1.1) 		195
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 133.3
(3)
P 		82.8
(-3)
P 		99.4
(-1)
P 		86.6
(-2.5)
P 		51
B 122.7
(3)
P 		89.8
(-3)
P 		99.8
(-1.2)
P 		109.3
(0.6)
P 		33
C 138.3
(2.1)
P 		99.2
(-1.7)
P 		147
(3)
P 		85.9
(-3)
P 		61
avr 131.4
(3) 		90.6
(-3) 		115.4
(0.6) 		93.9
(-2.5) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 55.8
(-3)
P 		109.6
(1.6)
P 		91.2
(0)
P 		125.9
(3)
P 		64.6
(-2.2)
P 		72.3
(-1.6)
P 		70
B 82.6
(-3)
P 		91.1
(-1.2)
P 		96.2
(-0.2)
P 		108.8
(2.4)
P 		111.5
(3)
P 		106.7
(2)
P 		29
C 105.4
(3)
P 		67.8
(-2.6)
P 		92.8
(1.1)
P 		73.7
(-1.7)
P 		64.9
(-3)
P 		98.5
(2)
P 		41
avr 81.3
(-2.7) 		89.5
(-0.5) 		93.4
(0.5) 		102.8
(3) 		80.3
(-3) 		92.5
(0.3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186149_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16664
Sequence Type Exemplar sequence
Representative Public ID C15H9.10 NCBI
Target Description C15H9.10 /REP_DB=WormBase Gene ID /WP=CE06836 /TR=Q18027 /GB=AAB52669.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076623(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076623 NCBI Caenorhabditis elegans C15H9.10 (C15H9.10) mRNA, complete cds. 11/11 None
SNAP00000042804 ENSEMBL cdna:SNAP chromosome:CEL140:X:6110961:6112874:-1 10/11 None
GENEFINDER00000042810 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6110961:6112874:-1 10/11 None
C15H9.10 ENSEMBL cdna:known chromosome:CEL140:X:6110961:6111721:-1 gene:C15H9.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6110960-6111721(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15H9.10
Entrez Gene 182645 Entrez gene
SwissProt Q18027 EMBL-EBI
WormBase CE06836 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE68871 Hypothetical protein CBG14834 [Caenorhabditis briggsae] 1.0E-164
blast AAB52669 Hypothetical protein C15H9.10 [Caenorhabditis elegans] ref|NP_509024.1| C15H9.10 [Caenorhabditis elegans] 1.0E-113
blast AAB52669 Hypothetical protein C15H9.10 [Caenorhabditis elegans] ref|NP_509024.1| C15H9.10 [Caenorhabditis elegans] 1.0E-108
blast CAE68871 Hypothetical protein CBG14834 [Caenorhabditis briggsae] 6.0E-82
blast AAB52665 Peroxisome assembly factor protein 3 [Caenorhabditis elegans] ref|NP_509025.1| PeRoXisome assembly factor family member (prx-3) [Caenorhabditis elegans] 3.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR006966 EMBL-EBI Peroxin-3 3.4E-56
Sequence
Target Sequence 
>C. ELEGANS:186149_AT
gatcctgacacttgaggcgtttaggcagaactacataccagagtcaatgaattcaatgtg
gaactctagaactggctcaaatggattgagtccaacagacaatccaatggatgttggaaa
tcgacgcattttcttgcaatgtgttcaatatttcactctacgaggtattcccgaacttat
ggagtacgttgctgaagcaattccaaacgaattgcaaaattggaaactaacggatatcaa
atcaaaaacagaaatgagggacttttttgatagagtatcataccgaattagttttaatgg
acttttaactaaactggttgcgccattggatggggacgggcaggacaacagctcgtctgt
aatgaaacttctgcaaaagctgacaacaaatcttgaatcaagcaaaagcatacatgtact
gaatagcttgctcgatttctacttctcagctgcactgaagatggtagaaaacgacgaaca
acccttggtcaaatatgttccagcattttccaattccttcccaattctcacatcaactgc
tttcgatagcccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCTGACACTTGAGGCGTTTAGG 247 417 15 Antisense
GTGGAACTCTAGAACTGGCTCAAAT 280 491 72 Antisense
GGAAATCGACGCATTTTCTTGCAAT 530 527 130 Antisense
ATTTCACTCTACGAGGTATTCCCGA 635 15 164 Antisense
GTTGCGCCATTGGATGGGGACGGGC 405 439 331 Antisense
GACGGGCAGGACAACAGCTCGTCTG 383 377 349 Antisense
GCTCGTCTGTAATGAAACTTCTGCA 380 299 365 Antisense
GAATAGCTTGCTCGATTTCTACTTC 305 327 435 Antisense
ATTTCTACTTCTCAGCTGCACTGAA 84 17 449 Antisense
TATGTTCCAGCATTTTCCAATTCCT 43 657 508 Antisense
ACATCAACTGCTTTCGATAGCCCAC 408 103 544 Antisense
Sequence Source Affymetrix Proprietary Database