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[186147_at]

Description E02C12.9 /REP_DB=WormBase Gene ID /WP=CE04318 /TR=Q19033 /GB=AAA83466.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 18.5
(-1.3)
A 		9.2
(-3)
A 		15.5
(-1.9)
A 		42.8
(3)
A 		34
B 38.3
(3)
A 		5.7
(-2.8)
A 		4.3
(-3)
A 		27.8
(1.1)
A 		34
C 8.6
(-2.3)
A 		10.3
(-2.2)
A 		1.9
(-3)
A 		63.2
(3)
A 		61
avr 21.8
(-0.7) 		8.4
(-2.8) 		7.2
(-3) 		44.6
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 5.9
(-3)
A 		19.3
(-0.9)
A 		33.1
(1.2)
A 		16.3
(-1.4)
A 		44.7
(3)
A 		5.6
(-3)
A 		39
B 3.3
(-2.6)
A 		3.5
(-2.5)
A 		11.5
(-0.7)
A 		12.2
(-0.5)
A 		27.6
(3)
A 		1.4
(-3)
A 		26
C 17.8
(0.4)
A 		30.3
(3)
A 		2.4
(-2.8)
A 		3.1
(-2.6)
A 		1.3
(-3)
A 		3.2
(-2.6)
A 		29
avr 9
(-1.4) 		17.7
(1.1) 		15.7
(0.5) 		10.5
(-1) 		24.5
(3) 		3.4
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.7
(3)
A 		2
(-3)
A 		4
(-0.4)
A 		6.3
(2.5)
A 		5
B 12.2
(3)
A 		1.4
(-2.8)
A 		1
(-3)
A 		5.9
(-0.4)
A 		11
C 2.8
(-1.7)
A 		3
(-1.6)
A 		0.7
(-3)
A 		10.7
(3)
A 		10
avr 7.2
(2.6) 		2.1
(-2.8) 		1.9
(-3) 		7.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.1
(-3)
A 		6.9
(-0.2)
A 		7.2
(-0)
A 		4.1
(-1.5)
A 		13.5
(3)
A 		1.4
(-2.9)
A 		12
B 1.1
(-2.7)
A 		1.2
(-2.6)
A 		2.8
(-1.7)
A 		3.2
(-1.5)
A 		11.2
(3)
A 		0.5
(-3)
A 		11
C 6.6
(1.2)
A 		9.2
(3)
A 		0.6
(-2.9)
A 		0.6
(-2.9)
A 		0.4
(-3)
A 		1.1
(-2.5)
A 		9
avr 2.9
(-1.5) 		5.8
(0.9) 		3.5
(-1) 		2.6
(-1.7) 		8.4
(3) 		1
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186147_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11653
Sequence Type Exemplar sequence
Representative Public ID E02C12.9 NCBI
Target Description E02C12.9 /REP_DB=WormBase Gene ID /WP=CE04318 /TR=Q19033 /GB=AAA83466.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073028(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073028 NCBI Caenorhabditis elegans E02C12.9 (E02C12.9) mRNA, complete cds. 11/11 None
SNAP00000032008 ENSEMBL cdna:SNAP chromosome:CEL140:V:9376538:9378062:-1 11/11 None
GENEFINDER00000032014 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9376490:9380988:-1 11/11 None
E02C12.9 ENSEMBL cdna:known chromosome:CEL140:V:9376538:9377426:-1 gene:E02C12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9376537-9377426(-) 99.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E02C12.9
Entrez Gene 183988 Entrez gene
SwissProt Q19033 EMBL-EBI
WormBase CE04318 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83467 Hypothetical protein E02C12.10 [Caenorhabditis elegans] ref|NP_505430.1| E02C12.10 [Caenorhabditis elegans] 0.0
blast AAA83466 Hypothetical protein E02C12.9 [Caenorhabditis elegans] ref|NP_505429.1| E02C12.9 [Caenorhabditis elegans] 1.0E-149
blast AAA83466 Hypothetical protein E02C12.9 [Caenorhabditis elegans] ref|NP_505429.1| E02C12.9 [Caenorhabditis elegans] 1.0E-148
blast AAF39843 Hypothetical protein F56A4.5 [Caenorhabditis elegans] ref|NP_503669.1| F56A4.5 [Caenorhabditis elegans] 1.0E-144
blast AAA83467 Hypothetical protein E02C12.10 [Caenorhabditis elegans] ref|NP_505430.1| E02C12.10 [Caenorhabditis elegans] 3.0E-80
blast CAE72164 Hypothetical protein CBG19264 [Caenorhabditis briggsae] 3.0E-80
blast AAA83467 Hypothetical protein E02C12.10 [Caenorhabditis elegans] ref|NP_505430.1| E02C12.10 [Caenorhabditis elegans] 5.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 1.8E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032014 1 909-926
Sequence
Target Sequence 
>C. ELEGANS:186147_AT
gaacgtatgttcagtcaactattcaatagttcgagtctccagaaacatttccaaggaatg
tattctgtttttgaaaaagaaaaatattatcaagtggatggattaatcgaaacctttgtc
gtctatcaaaaactcttgaagaagtataccaaaatttctgagctattgggattcaagtca
gttcttaatcatggagacttgtggcaatcaaatatgattcattcaatggagaataatgga
aaattaaagttggaagcaataattgattggcaaagtactgttattttgccacctggatta
gatacagcagaacttattgtgggatgtttatcagctgaagatcgccgtgaaaaagggcat
gatctgttgcttctataccacaaaacgttcattaatgtttttggatcagaagtgttctcc
ttcgaagagctgcaagattcctacaatttatattttccaatggcagcaattttaattgtt
cctggaatgatatcattcatgacaaatacgcaaatcactgaggctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGTATGTTCAGTCAACTATTCA 492 347 187 Antisense
GTTCGAGTCTCCAGAAACATTTCCA 342 439 215 Antisense
AATCGAAACCTTTGTCGTCTATCAA 327 169 291 Antisense
GAGCTATTGGGATTCAAGTCAGTTC 41 389 346 Antisense
TACTGTTATTTTGCCACCTGGATTA 453 645 462 Antisense
GTTTATCAGCTGAAGATCGCCGTGA 366 449 512 Antisense
GGGCATGATCTGTTGCTTCTATACC 503 493 541 Antisense
GCTTCTATACCACAAAACGTTCATT 317 303 555 Antisense
AAGTGTTCTCCTTCGAAGAGCTGCA 408 159 596 Antisense
AAGAGCTGCAAGATTCCTACAATTT 647 153 611 Antisense
CAAATACGCAAATCACTGAGGCTGA 226 183 689 Antisense
Sequence Source Affymetrix Proprietary Database