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[186146_s_at]

Description Y37D8A.11 /REP_DB=WormBase Gene ID /WP=CE20215 /TR=Q9XWW0 /GB=CAA21530.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_total > 97      4grp_total > 08      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 87.8
(-3)
P 		111.4
(-2.4)
P 		151.9
(-1.5)
P 		341.5
(3)
P 		254
B 70.6
(-3)
P 		89.5
(-2.6)
P 		165.4
(-0.8)
P 		326
(3)
P 		255
C 113.1
(-2.6)
P 		102.3
(-3)
P 		153.1
(-1.3)
P 		279.4
(3)
P 		177
avr 90.5
(-3) 		101.1
(-2.7) 		156.8
(-1.2) 		315.6
(3) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 447
1 2 3 4 5 6 range
A 115.4
(-2.7)
P 		98
(-3)
P 		120.3
(-2.7)
P 		180.1
(-1.7)
P 		282.6
(-0.2)
P 		490.6
(3)
P 		393
B 95.9
(-3)
P 		120.7
(-2.6)
P 		141.5
(-2.3)
P 		221.9
(-1.2)
P 		406.8
(1.5)
P 		508.1
(3)
P 		412
C 95.3
(-2.5)
M 		75.4
(-2.8)
P 		61.4
(-3)
P 		185.5
(-1.2)
P 		311.7
(0.6)
P 		479.8
(3)
P 		418
avr 102.2
(-2.9) 		98
(-3) 		107.7
(-2.9) 		195.8
(-1.5) 		333.7
(0.6) 		492.8
(3) 		395
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 32
(-1.2)
P 		24.2
(-3)
P 		39.7
(0.6)
P 		50
(3)
P 		26
B 22.5
(-2.9)
P 		22.1
(-3)
P 		38.3
(-0.9)
P 		69.5
(3)
P 		47
C 37.4
(-1)
P 		29.4
(-3)
P 		53.4
(3)
P 		47.1
(1.4)
P 		24
avr 30.6
(-1.9) 		25.2
(-3) 		43.8
(0.7) 		55.5
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 21.3
(-3)
P 		34.9
(-2.2)
P 		26.2
(-2.7)
P 		45.7
(-1.5)
P 		85.3
(0.9)
P 		119.4
(3)
P 		98
B 33.4
(-3)
P 		40.2
(-2.7)
P 		34.4
(-3)
P 		58.8
(-2)
P 		165.3
(2.1)
P 		189.5
(3)
P 		156
C 35.3
(-2.2)
M 		23
(-2.7)
P 		15.6
(-3)
P 		37.3
(-2.1)
P 		100.9
(0.5)
P 		160.6
(3)
P 		145
avr 30
(-2.8) 		32.7
(-2.7) 		25.4
(-3) 		47.3
(-2) 		117.2
(1.2) 		156.5
(3) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186146_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6492
Sequence Type Exemplar sequence
Representative Public ID Y37D8A.11 NCBI
Target Description Y37D8A.11 /REP_DB=WormBase Gene ID /WP=CE20215 /TR=Q9XWW0 /GB=CAA21530.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027656(11), NM_001027657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027656 NCBI Caenorhabditis elegans Y37D8A.11a (Y37D8A.11) mRNA, complete cds. 11/11 None
NM_001027657 NCBI Caenorhabditis elegans Y37D8A.11b (Y37D8A.11) mRNA, complete cds. 11/11 None
SNAP00000028779 ENSEMBL cdna:SNAP chromosome:CEL140:III:12875740:12877450:-1 11/11 None
GENEFINDER00000028797 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12875740:12877450:-1 11/11 None
Y37D8A.11a.1 ENSEMBL cdna:known chromosome:CEL140:III:12875673:12877450:-1 gene:Y37D8A.11 11/11 None
Y37D8A.11a.2 ENSEMBL cdna:known chromosome:CEL140:III:12875740:12877452:-1 gene:Y37D8A.11 11/11 None
Y37D8A.11b ENSEMBL cdna:known chromosome:CEL140:III:12875740:12877450:-1 gene:Y37D8A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12875735-12877446(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y37D8A.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21530 Hypothetical protein Y37D8A.11a [Caenorhabditis elegans] ref|NP_001022827.1| Y37D8A.11a [Caenorhabditis elegans] 0.0
blast CAH10813 Hypothetical protein Y37D8A.11b [Caenorhabditis elegans] ref|NP_001022828.1| Y37D8A.11b [Caenorhabditis elegans] 0.0
blast CAH10813 Hypothetical protein Y37D8A.11b [Caenorhabditis elegans] ref|NP_001022828.1| Y37D8A.11b [Caenorhabditis elegans] 1.0E-157
Sequence
Target Sequence 
>C. ELEGANS:186146_S_AT
taaagcgaagggatccgcagctccgaagtccgccagcagccgagccgaggatggtgagag
cagctcaacaaatgatgcagctggcacaagattcgtaatcggcgagctagtcgcatgcac
ctacaagggaaaagtatatgacgcggtcatcaccgacatcaagcccgacaaggatggaaa
ggagtgctactgcattcacttcaaaggatggaacaatcgttacgatgagcaaattccaat
cggcgaggagacagaccgtatttttaaagggatagcagatggttaccgagctccagttgt
cacaatgcgcaagtccgctagaaaccatgaaaaatccacagagcctcaagcgacgaaaga
gaacgctccgcggctagtcggaaaacgtagagaacaattcataatcggtgagcaagtcac
gtgcacacagaacggaaagccatatgacgcgtacatcgttgacatcataaccgacactga
tgggaaggatttttactgcgttcacttcaaaggatggaacagccgttacgatgagaaaat
tccagtcggcgaggagcagggtcgattgttcaagggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAGCGAAGGGATCCGCAGCTCCG 605 639 894 Antisense
CAGCAGCCGAGCCGAGGATGGTGAG 283 205 927 Antisense
AATCGGCGAGCTAGTCGCATGCACC 616 169 990 Antisense
TATGACGCGGTCATCACCGACATCA 479 655 1030 Antisense
AGGAGTGCTACTGCATTCACTTCAA 279 57 1073 Antisense
AGCAGATGGTTACCGAGCTCCAGTT 463 77 1167 Antisense
GAGCTCCAGTTGTCACAATGCGCAA 166 387 1181 Antisense
GCGCAAGTCCGCTAGAAACCATGAA 275 289 1200 Antisense
AAATCCACAGAGCCTCAAGCGACGA 499 119 1225 Antisense
ACGCTCCGCGGCTAGTCGGAAAACG 217 89 1256 Antisense
GGAGCAGGGTCGATTGTTCAAGGGC 503 513 1446 Antisense
Sequence Source Affymetrix Proprietary Database