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[186145_at]

Description C39B5.10 /REP_DB=WormBase Gene ID /WP=CE23576 /TR=Q9N5W6 /GB=AAF39773.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 7.8
(-2.2)
A 		12.3
(-1.4)
A 		35.7
(3)
A 		3.5
(-3)
A 		32
B 21.4
(3)
A 		21.2
(2.9)
A 		14.2
(-0.3)
A 		8.2
(-3)
A 		13
C 2.4
(-3)
A 		31.1
(3)
A 		5.2
(-2.4)
A 		10.1
(-1.4)
A 		29
avr 10.5
(-1.6) 		21.5
(3) 		18.4
(1.7) 		7.3
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 51.5
(3)
A 		18
(-1)
A 		1.4
(-3)
A 		29
(0.3)
A 		5.6
(-2.5)
A 		26
(-0.1)
A 		50
B 2.2
(-2.9)
A 		7.3
(-0.3)
A 		2.1
(-3)
A 		4.9
(-1.6)
A 		13.8
(3)
A 		6.1
(-0.9)
A 		12
C 4.5
(-2.1)
A 		2.4
(-2.9)
A 		8.1
(-0.8)
A 		18.4
(3)
A 		2
(-3)
A 		2.4
(-2.9)
A 		16
avr 19.4
(3) 		9.2
(-0.9) 		3.9
(-3) 		17.4
(2.2) 		7.1
(-1.8) 		11.5
(-0.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.8
(-1.4)
A 		2.7
(-1.5)
A 		9.3
(3)
A 		0.5
(-3)
A 		9
B 6.8
(3)
A 		5.2
(1.1)
A 		3.3
(-1.2)
A 		1.8
(-3)
A 		5
C 0.8
(-3)
A 		8.9
(3)
A 		1.8
(-2.3)
A 		1.7
(-2.3)
A 		8
avr 3.5
(0.1) 		5.6
(3) 		4.8
(1.9) 		1.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.5
(3)
A 		6.4
(1)
A 		0.3
(-3)
A 		7.4
(1.6)
A 		1.7
(-2.1)
A 		6.3
(0.9)
A 		9
B 0.8
(-2.6)
A 		2.4
(-0.8)
A 		0.5
(-3)
A 		1.3
(-2.1)
A 		5.6
(3)
A 		2.3
(-0.9)
A 		5
C 1.7
(-1)
A 		0.7
(-3)
A 		2.1
(-0.2)
A 		3.7
(3)
A 		0.7
(-3)
A 		0.8
(-2.8)
A 		3
avr 4
(2.8) 		3.2
(1.3) 		1
(-3) 		4.1
(3) 		2.7
(0.3) 		3.1
(1.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186145_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8305
Sequence Type Exemplar sequence
Representative Public ID C39B5.10 NCBI
Target Description C39B5.10 /REP_DB=WormBase Gene ID /WP=CE23576 /TR=Q9N5W6 /GB=AAF39773.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065118(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065118 NCBI Caenorhabditis elegans C39B5.10 (C39B5.10) mRNA, complete cds. 11/11 None
C39B5.10 ENSEMBL cdna:known chromosome:CEL140:III:2238955:2240160:-1 gene:C39B5.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012612 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2238954-2240160(-) 96.09 100.0
Public Domain and Genome References
Gene Title
Ensembl C39B5.10
Entrez Gene 183329 Entrez gene
SwissProt Q9N5W6 EMBL-EBI
WormBase CE23576 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39773 Hypothetical protein C39B5.10 [Caenorhabditis elegans] ref|NP_497519.1| C39B5.10 [Caenorhabditis elegans] 1.0E-116
Sequence
Target Sequence 
>C. ELEGANS:186145_AT
attgcaaacttgtctcattccatgtagcgaatgtgaatgataactacaaattacatgttt
tctgctatgaatcaagattttttgaaacattgacatatactgttcgtactttctacaatg
aaaactatacccttcctgtcaaactctaccgagtttgctatctgagggaagttgcaggcg
ccaacaatttcttatcagttcctatacatcaccagttccgaatcaagagttcaatagcaa
atgtgcattggtttcattttaaatttgaattttatcgttttaactggcatgaaacagata
agacaattcattttcatccatcagaaaatgtggaagcagcttttcctattgctggcacgc
aaacccaatcaccctctggaactaattcaaatatgtctcaagaaaagtgtcccggtgata
tttgtatgacgacatacgtaacaaaagacggagatgaaaaggatagcacgtttggatgcg
caacagctcaatgcacacagcctttcagaggcggttgccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCAAACTTGTCTCATTCCATGT 620 5 44 Antisense
GACATATACTGTTCGTACTTTCTAC 275 371 135 Antisense
TGAAAACTATACCCTTCCTGTCAAA 526 571 162 Antisense
TCTACCGAGTTTGCTATCTGAGGGA 238 615 188 Antisense
ATCAGTTCCTATACATCACCAGTTC 413 29 237 Antisense
GGAAGCAGCTTTTCCTATTGCTGGC 475 531 375 Antisense
TATTGCTGGCACGCAAACCCAATCA 522 663 390 Antisense
CAATCACCCTCTGGAACTAATTCAA 561 181 409 Antisense
AGCACGTTTGGATGCGCAACAGCTC 303 77 508 Antisense
AACAGCTCAATGCACACAGCCTTTC 193 137 525 Antisense
ACAGCCTTTCAGAGGCGGTTGCCGT 123 109 540 Antisense
Sequence Source Affymetrix Proprietary Database