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[186143_at]

Description H20E11.3 /REP_DB=WormBase Gene ID /WP=CE19494 /TR=Q9TYZ1 /GB=AAC68975.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 50      6grp_total > 41      4grp_total > 62      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 209.6
(3)
P 		96
(-0.3)
P 		112.2
(0.1)
P 		4.6
(-3)
A 		205
B 210.9
(3)
P 		110.1
(-0.4)
P 		137.1
(0.5)
P 		33.9
(-3)
A 		177
C 201.1
(3)
P 		132.9
(-0)
P 		147.2
(0.6)
P 		66.5
(-3)
A 		135
avr 207.2
(3) 		113
(-0.3) 		132.2
(0.4) 		35
(-3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 159.6
(-0.6)
P 		214.3
(0.6)
P 		327.9
(3)
P 		273.7
(1.8)
P 		107.2
(-1.7)
P 		45.3
(-3)
M 		283
B 179.5
(0.7)
P 		218.9
(2.4)
P 		232.5
(3)
P 		213.9
(2.2)
P 		138.5
(-1.1)
P 		95.5
(-3)
P 		137
C 214
(1.8)
P 		162.6
(-0.4)
P 		235.9
(2.7)
P 		244.4
(3)
P 		116.2
(-2.3)
P 		97.9
(-3)
P 		147
avr 184.4
(0.4) 		198.6
(0.8) 		265.4
(3) 		244
(2.3) 		120.6
(-1.7) 		79.6
(-3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 76.3
(3)
P 		20.8
(-1.4)
P 		29.3
(-0.7)
P 		0.7
(-3)
A 		76
B 67.2
(3)
P 		27.2
(-1)
P 		31.8
(-0.5)
P 		7.2
(-3)
A 		60
C 66.6
(3)
P 		38.2
(-0.1)
P 		51.3
(1.3)
P 		11.2
(-3)
A 		55
avr 70
(3) 		28.7
(-0.9) 		37.5
(-0.1) 		6.4
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 29.4
(-1.3)
P 		76.2
(3)
P 		71.4
(2.6)
P 		69.4
(2.4)
P 		32.4
(-1)
P 		11
(-3)
M 		65
B 62.5
(1.3)
P 		72.9
(3)
P 		56.4
(0.3)
P 		56.7
(0.4)
P 		56.3
(0.3)
P 		35.6
(-3)
P 		37
C 79.3
(3)
P 		49.6
(-0.8)
P 		60
(0.5)
P 		49.2
(-0.9)
P 		37.6
(-2.4)
P 		32.8
(-3)
P 		47
avr 57.1
(1.6) 		66.2
(3) 		62.6
(2.5) 		58.4
(1.8) 		42.1
(-0.6) 		26.5
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186143_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9340
Sequence Type Exemplar sequence
Representative Public ID H20E11.3 NCBI
Target Description H20E11.3 /REP_DB=WormBase Gene ID /WP=CE19494 /TR=Q9TYZ1 /GB=AAC68975.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028091(11), NM_001028090(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028091 NCBI Caenorhabditis elegans H20E11.3b (H20E11.3) mRNA, complete cds. 11/11 None
NM_001028090 NCBI Caenorhabditis elegans H20E11.3a (H20E11.3) mRNA, complete cds. 11/11 None
SNAP00000015308 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6824878:6826744:1 11/11 None
GENEFINDER00000015312 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6824790:6829474:1 11/11 None
H20E11.3b ENSEMBL cdna:known chromosome:CEL140:IV:6824878:6826744:1 gene:H20E11.3 11/11 None
H20E11.3a ENSEMBL cdna:known chromosome:CEL140:IV:6824958:6826744:1 gene:H20E11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6824883-6826750(+) 99.54 100.0
Public Domain and Genome References
Ensembl H20E11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP86616 Hypothetical protein H20E11.3b [Caenorhabditis elegans] ref|NP_001023262.1| H20E11.3b [Caenorhabditis elegans] 0.0
blast AAC68974 Hypothetical protein H20E11.2 [Caenorhabditis elegans] ref|NP_501051.1| H20E11.2 [Caenorhabditis elegans] 0.0
blast AAC68974 Hypothetical protein H20E11.2 [Caenorhabditis elegans] ref|NP_501051.1| H20E11.2 [Caenorhabditis elegans] 1.0E-164
blast AAC68975 Hypothetical protein H20E11.3a [Caenorhabditis elegans] ref|NP_001023261.1| H20E11.3a [Caenorhabditis elegans] 1.0E-160
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 7.4E-16
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.4E-8
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 7.4E-16
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 7.2E-10
Sequence
Target Sequence 
>C. ELEGANS:186143_AT
ttctgatcctcaattgccaaacgctgtgatgataaggggaaatgagccaatttcagtcag
cttggccacttctcggtacatgtatccaactgatttactctacaacacatttgtaattga
tggagatttttggaatcaaacagctgtttataggcttttgtcacttgaaggaactgctcc
gttggttacaactggaaatgatgttacaattgtgacgtttttcaatgaaacatatgatgc
ttgcgcagtcgttttgaatccaaaatctgaagctgacaatttcagttatttaacatccca
agcaagtgttaatggagaaattgataagattagttttgctccattagatcaaagacaagc
agttgaagttgttgctgttcagaatactaaaattattatggattcactcgtctttgatac
gaatgttggaccttggtgtattgcaaaagtagtctccggaccaccaaacaattcgtctca
actacttctcgatttgtcaaaagctcaaggaatgatgccatatgtgtttgaaatgcaata
cttcacagttatcgccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGATCCTCAATTGCCAAACGCT 154 693 498 Antisense
CCAATTTCAGTCAGCTTGGCCACTT 98 277 544 Antisense
CCACTTCTCGGTACATGTATCCAAC 110 275 563 Antisense
CCAACTGATTTACTCTACAACACAT 103 277 583 Antisense
GCTGTTTATAGGCTTTTGTCACTTG 415 293 640 Antisense
GGAACTGCTCCGTTGGTTACAACTG 423 529 667 Antisense
GATGCTTGCGCAGTCGTTTTGAATC 541 413 733 Antisense
TTATGGATTCACTCGTCTTTGATAC 169 681 893 Antisense
ACCACCAAACAATTCGTCTCAACTA 409 85 957 Antisense
GTCTCAACTACTTCTCGATTTGTCA 410 469 972 Antisense
GCAATACTTCACAGTTATCGCCGAA 177 323 1032 Antisense
Sequence Source Affymetrix Proprietary Database