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[186142_at]

Description W08F4.10 /REP_DB=WormBase Gene ID /WP=CE14730 /TR=O02112 /GB=AAC71174.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 2.2
(-3)
A 		24.9
(-1.4)
A 		19
(-1.9)
A 		89.9
(3)
A 		88
B 21.2
(3)
A 		6.1
(-1.6)
A 		1.6
(-3)
A 		18.7
(2.2)
A 		20
C 17.5
(-2.3)
A 		39
(-1.2)
A 		3.2
(-3)
A 		123.4
(3)
A 		120
avr 13.6
(-2.5) 		23.3
(-1.7) 		7.9
(-3) 		77.3
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 20
(-0.4)
A 		8.1
(-2.5)
A 		39.4
(3)
A 		5
(-3)
A 		27
(0.8)
A 		11.8
(-1.8)
A 		34
B 15.5
(-0.3)
A 		26.4
(2.1)
A 		30.3
(3)
A 		27.1
(2.3)
A 		3.4
(-3)
A 		19.1
(0.5)
A 		27
C 26
(1.1)
A 		31
(2.1)
A 		5.3
(-2.9)
A 		4.7
(-3)
A 		35.7
(3)
A 		32
(2.3)
A 		31
avr 20.5
(0.9) 		21.8
(1.5) 		25
(3) 		12.3
(-3) 		22
(1.6) 		21
(1.1) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 0.8
(-3)
A 		5.4
(-0.8)
A 		5
(-1)
A 		13.2
(3)
A 		12
B 6.8
(3)
A 		1.5
(-2)
A 		0.4
(-3)
A 		4
(0.4)
A 		6
C 5.8
(-1.6)
A 		11.2
(0.1)
A 		1.1
(-3)
A 		20.8
(3)
A 		20
avr 4.5
(-1.7) 		6
(-0.8) 		2.2
(-3) 		12.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.7
(-1)
A 		2.9
(-1.7)
A 		8.6
(3)
A 		1.3
(-3)
A 		8.2
(2.7)
A 		2.9
(-1.7)
A 		7
B 5.4
(0.2)
A 		8.8
(3)
A 		7.4
(1.9)
A 		7.2
(1.7)
A 		1.4
(-3)
A 		7.1
(1.6)
A 		7
C 9.6
(1.9)
A 		9.5
(1.9)
A 		1.3
(-2.8)
A 		0.9
(-3)
A 		11.5
(3)
A 		10.7
(2.5)
A 		11
avr 6.2
(1.7) 		7.1
(3) 		5.8
(1.1) 		3.1
(-3) 		7
(2.9) 		6.9
(2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186142_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4279
Sequence Type Exemplar sequence
Representative Public ID W08F4.10 NCBI
Target Description W08F4.10 /REP_DB=WormBase Gene ID /WP=CE14730 /TR=O02112 /GB=AAC71174.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061364 NCBI Caenorhabditis elegans W08F4.10 (W08F4.10) mRNA, complete cds. 11/11 None
W08F4.10 ENSEMBL cdna:known chromosome:CEL140:II:590398:591999:-1 gene:W08F4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:590397-591435(-) 87.34 87.34
Public Domain and Genome References
Gene Title
Ensembl W08F4.10
Entrez Gene 189302 Entrez gene
WormBase CE14730 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_493765 W08F4.10 [Caenorhabditis elegans] 1.0E-119
blast G88021 protein W10D9.2 [imported] - Caenorhabditis elegans 1.0E-50
blast AAB71207 Hypothetical protein C24H12.11 [Caenorhabditis elegans] ref|NP_493734.1| C24H12.11 [Caenorhabditis elegans] 1.0E-43
Sequence
Target Sequence 
>C. ELEGANS:186142_AT
tattgatggtgatgcaggcgcgctccatcggactcaacgccttatattggcgcacgcact
acaagagcaagactccatgtttgccttatacaactttacatgaattgattaatgttttgg
atgtattaaatgatttattcaaaattgatcatgtcgatttggcaattgatagggatcgtt
tttatggggaatttaaatccgcgttgagccatcctttatttcggaaatgtcattttattc
aacttcttggatatagttcgtacattactacagaagacatggaatttatattgaagaatt
ttgatttgaaacatggattttcaaatcattgtttacaagcaactgggttcaaccataacg
atggtctggaagtagtggattgttcagaaggacgtgatatcgaaagaagtgatggtatac
tcgcaactattttagttgaatccaaagtcttgtactttctcatctggcatgacagatttc
cagtagatgaatttgggtgtttggttgtgcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGATGGTGATGCAGGCGCGCTC 468 663 41 Antisense
TCCATCGGACTCAACGCCTTATATT 225 591 64 Antisense
AACGCCTTATATTGGCGCACGCACT 110 147 76 Antisense
GGCGCACGCACTACAAGAGCAAGAC 566 541 89 Antisense
AGAGCAAGACTCCATGTTTGCCTTA 623 69 104 Antisense
GTTTGCCTTATACAACTTTACATGA 390 449 119 Antisense
ATGTCATTTTATTCAACTTCTTGGA 578 47 267 Antisense
GTTTACAAGCAACTGGGTTCAACCA 431 449 371 Antisense
GAATCCAAAGTCTTGTACTTTCTCA 55 331 478 Antisense
TACTTTCTCATCTGGCATGACAGAT 239 645 493 Antisense
GAATTTGGGTGTTTGGTTGTGCAGA 275 325 529 Antisense
Sequence Source Affymetrix Proprietary Database