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[186141_at]

Description Y38H6C.21 /REP_DB=WormBase Gene ID /WP=CE19115 /TR=Q9XX37 /GB=CAA21002.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 13
(-3)
M 		51.3
(3)
A 		21.8
(-1.6)
A 		13.6
(-2.9)
A 		38
B 41.5
(3)
A 		26.8
(-1.5)
A 		29.3
(-0.7)
A 		21.8
(-3)
A 		20
C 25.2
(-1.8)
A 		6.6
(-3)
A 		33.5
(-1.2)
A 		96.8
(3)
P 		90
avr 26.6
(-3) 		28.2
(-2.5) 		28.2
(-2.5) 		44.1
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 42.8
(-0.1)
A 		39.5
(-1.2)
A 		52.4
(3)
P 		50.8
(2.5)
P 		34.1
(-3)
P 		37.8
(-1.8)
A 		18
B 14.9
(-1.8)
A 		41.8
(1.5)
P 		49.1
(2.4)
P 		53.8
(3)
P 		32.2
(0.3)
A 		5.2
(-3)
A 		49
C 30.3
(-2.5)
A 		71.6
(3)
P 		29.8
(-2.6)
A 		38.4
(-1.4)
A 		26.8
(-3)
A 		40
(-1.2)
A 		45
avr 29.3
(-2.6) 		51
(3) 		43.8
(1.1) 		47.7
(2.2) 		31
(-2.2) 		27.7
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.7
(-1.2)
M 		11.1
(3)
A 		5.7
(-0.6)
A 		2
(-3)
A 		9
B 13.2
(3)
A 		6.6
(-1.6)
A 		6.8
(-1.5)
A 		4.6
(-3)
A 		9
C 8.3
(-0.3)
A 		1.9
(-3)
A 		11.7
(1.1)
A 		16.3
(3)
P 		14
avr 8.7
(3) 		6.5
(-3) 		8.1
(1.4) 		7.6
(0) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7.9
(-3)
A 		14
(3)
A 		11.4
(0.4)
P 		12.9
(1.9)
P 		10.3
(-0.6)
P 		9.2
(-1.7)
A 		6
B 5.2
(-1.4)
A 		13.9
(2.9)
P 		11.9
(1.9)
P 		14.2
(3)
P 		13.1
(2.5)
A 		1.9
(-3)
A 		12
C 11.2
(-1.5)
A 		21.9
(3)
P 		7.6
(-3)
A 		7.7
(-3)
A 		8.7
(-2.5)
A 		13.4
(-0.6)
A 		14
avr 8.1
(-3) 		16.6
(3) 		10.3
(-1.4) 		11.6
(-0.5) 		10.7
(-1.2) 		8.2
(-2.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186141_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14535
Sequence Type Exemplar sequence
Representative Public ID Y38H6C.21 NCBI
Target Description Y38H6C.21 /REP_DB=WormBase Gene ID /WP=CE19115 /TR=Q9XX37 /GB=CAA21002.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075563(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075563 NCBI Caenorhabditis elegans Y38H6C.21 (Y38H6C.21) mRNA, complete cds. 11/11 None
Y38H6C.21 ENSEMBL cdna:known chromosome:CEL140:V:20552167:20553318:-1 gene:Y38H6C.21 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20552166-20553318(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38H6C.21
Entrez Gene 189701 Entrez gene
SwissProt Q9XX37 EMBL-EBI
WormBase CE19115 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21002 Hypothetical protein Y38H6C.21 [Caenorhabditis elegans] ref|NP_507964.1| Y38H6C.21 [Caenorhabditis elegans] 1.0E-153
blast AAC48249 Hypothetical protein ZK697.1 [Caenorhabditis elegans] ref|NP_503498.1| ZK697.1 [Caenorhabditis elegans] 1.0E-31
blast CAB05673 Hypothetical protein C08F11.2 [Caenorhabditis elegans] ref|NP_502628.1| C08F11.2 [Caenorhabditis elegans] 1.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507964.1 6 15-37,58-80,100-122,156-178,193-215,228-250
Y38H6C.21 6 15-37,58-80,100-122,156-178,193-215,228-250
Sequence
Target Sequence 
>C. ELEGANS:186141_AT
gtatgccgaggctgtgattaatcttatgatagttgcgccattatttttgtcaagttttct
attaggatttgtgatagctttttcgtttcttgccgcaattcagcgtattctaatactgca
ttttaaagaatataagtggctaatgactggggaaaaacgaacgtccacaaaaaaactcca
gcaagaaaccattctcctggagatttacaactgtattttgtttgcgatgacaatcattac
cggatctttttactttcacatttacaaactttttcgccgtttaccatctacgtatttctc
ctcgaaaatccatttgctctatcagttcgttccaatttatatcgcacaattggtatattt
gtttgctgattttttggattttatcaccgaaaacatgcacatctctattagcttcaatat
ctcagcagttcttgcagtattacctcatttcattccgcttattgtctccctatcatatat
tgcatcaaaagagaatattagaactatggtgatttcggtgatacgacctgccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGCCGAGGCTGTGATTAATCTT 587 455 282 Antisense
GATAGTTGCGCCATTATTTTTGTCA 211 425 309 Antisense
GTGATAGCTTTTTCGTTTCTTGCCG 318 485 352 Antisense
TACCGGATCTTTTTACTTTCACATT 147 651 519 Antisense
TTCGCCGTTTACCATCTACGTATTT 267 697 554 Antisense
ATCCATTTGCTCTATCAGTTCGTTC 574 39 589 Antisense
GTTCGTTCCAATTTATATCGCACAA 125 443 606 Antisense
AACATGCACATCTCTATTAGCTTCA 581 137 673 Antisense
AGCAGTTCTTGCAGTATTACCTCAT 491 77 705 Antisense
GCTTATTGTCTCCCTATCATATATT 582 303 738 Antisense
GATTTCGGTGATACGACCTGCCATC 72 429 792 Antisense
Sequence Source Affymetrix Proprietary Database