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[186140_at]

Description B0432.11 /REP_DB=WormBase Gene ID /WP=CE07749 /TR=P90995 /GB=AAB37897.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 01      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 8.1
(3)
A 		8.1
(3)
A 		7.3
(-0.4)
A 		6.7
(-3)
A 		1
B 12.3
(-0.3)
A 		3
(-3)
A 		23.9
(3)
A 		5.7
(-2.2)
A 		21
C 6.9
(-2.4)
A 		13.8
(-1.6)
A 		1.3
(-3)
A 		56.8
(3)
A 		56
avr 9.1
(-2.7) 		8.3
(-3) 		10.8
(-2) 		23.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 12.5
(-1.8)
A 		3.4
(-3)
A 		39.2
(1.7)
A 		7.6
(-2.4)
A 		6.7
(-2.6)
A 		48.9
(3)
A 		46
B 5.2
(-2.5)
A 		2.5
(-3)
A 		5
(-2.6)
A 		7.9
(-2.1)
A 		37.1
(3)
A 		26
(1.1)
A 		35
C 2
(-3)
A 		4.4
(-2.2)
A 		2
(-3)
A 		18
(2.3)
A 		18.6
(2.5)
A 		20.1
(3)
A 		18
avr 6.6
(-2.3) 		3.4
(-3) 		15.4
(-0.5) 		11.2
(-1.3) 		20.8
(0.7) 		31.7
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.9
(3)
A 		1.8
(-0.5)
A 		1.9
(-0.2)
A 		1
(-3)
A 		2
B 3.9
(1)
A 		0.7
(-3)
A 		5.5
(3)
A 		1.2
(-2.4)
A 		5
C 2.3
(-1.8)
A 		4
(-0.7)
A 		0.4
(-3)
A 		9.6
(3)
A 		9
avr 3
(-0.2) 		2.2
(-3) 		2.6
(-1.6) 		3.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.3
(-2.4)
A 		1.2
(-3)
A 		8.5
(1.1)
A 		1.9
(-2.6)
A 		2
(-2.6)
A 		11.9
(3)
A 		11
B 1.8
(-2.6)
A 		0.8
(-3)
A 		1.2
(-2.8)
A 		2.1
(-2.5)
A 		15.1
(3)
A 		9.7
(0.7)
A 		14
C 0.7
(-2.8)
A 		1.3
(-2.2)
A 		0.5
(-3)
A 		3.6
(0)
A 		6
(2.3)
A 		6.7
(3)
A 		6
avr 1.6
(-2.6) 		1.1
(-3) 		3.4
(-1.3) 		2.5
(-2) 		7.7
(1.8) 		9.4
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186140_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4950
Sequence Type Exemplar sequence
Representative Public ID B0432.11 NCBI
Target Description B0432.11 /REP_DB=WormBase Gene ID /WP=CE07749 /TR=P90995 /GB=AAB37897.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061296(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061296 NCBI Caenorhabditis elegans B0432.11 (B0432.11) mRNA, complete cds. 11/11 None
SNAP00000033641 ENSEMBL cdna:SNAP chromosome:CEL140:II:293918:294641:-1 11/11 None
GENEFINDER00000033650 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:293918:294641:-1 11/11 None
B0432.11 ENSEMBL cdna:known chromosome:CEL140:II:293918:294641:-1 gene:B0432.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:293917-294641(-) 95.11 100.0
Public Domain and Genome References
Gene Title
Ensembl B0432.11
Entrez Gene 181991 Entrez gene
SwissProt P90995 EMBL-EBI
WormBase CE07749 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37897 Hypothetical protein B0432.11 [Caenorhabditis elegans] ref|NP_493697.1| B0432.11 [Caenorhabditis elegans] 7.0E-62
blast AAC04422 Hypothetical protein K07H8.7 [Caenorhabditis elegans] ref|NP_501385.1| K07H8.7 [Caenorhabditis elegans] 1.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493697.1 1 10-32
B0432.11 1 10-32
SNAP00000033641 1 10-32
GENEFINDER00000033650 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:186140_AT
ctcaaatcactggcactcattataccaattatctctggagtgttgatattatgcagtcat
aagcgtggagaagcaaaaacgaagaatgcaggttctcgtacaaaaaagtcagcgacgtcg
acctcaattccagctccagctccagctccagctccaactgaagcaactacaattgcaaag
gatagtttgatgggaaaactagagccgccgaaggagccagtcaaagaaccggagagtgat
aaaagtggaacggggcctgttaactctgttaaatggcttcgtggaaggaaaaaagcttgg
aaatcaaggaaaggaagcaagaaaggaaagaaaccaaaaaaaaccgaaacggattctcag
catactcaagttatcgaaatggaattaggaaaggctgcaagatctggcgaaggagaatcc
aaattgacagctaaagaagatcagaaagttaatgagaagcccgatgggaagacggttcag
tttgcggataagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCAAATCACTGGCACTCATTATAC 555 227 55 Antisense
GGCACTCATTATACCAATTATCTCT 658 535 66 Antisense
AAAGTCAGCGACGTCGACCTCAATT 495 121 159 Antisense
CTCCAGCTCCAACTGAAGCAACTAC 517 235 200 Antisense
GATGGGAAAACTAGAGCCGCCGAAG 394 407 243 Antisense
GCCGCCGAAGGAGCCAGTCAAAGAA 709 283 258 Antisense
AACTCTGTTAAATGGCTTCGTGGAA 106 141 316 Antisense
ACCGAAACGGATTCTCAGCATACTC 591 89 397 Antisense
AAGGCTGCAAGATCTGGCGAAGGAG 525 161 445 Antisense
GAAGCCCGATGGGAAGACGGTTCAG 692 337 510 Antisense
AGACGGTTCAGTTTGCGGATAAGCT 285 71 524 Antisense
Sequence Source Affymetrix Proprietary Database