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[186139_at]

Description F02E11.5 /REP_DB=WormBase Gene ID /WP=CE09196 /TR=O16575 /GB=AAB66052.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 0      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 9.6
(-3)
A 		15.6
(-2.5)
A 		42.6
(-0.4)
A 		86.1
(3)
A 		77
B 21.4
(-3)
A 		22.4
(-2.9)
A 		67.2
(3)
A 		39.7
(-0.6)
A 		46
C 42.7
(-0.4)
A 		13.9
(-3)
A 		43.4
(-0.3)
A 		79.6
(3)
A 		66
avr 24.6
(-2.1) 		17.3
(-3) 		51.1
(1) 		68.5
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 14.4
(-2.2)
A 		42.6
(0.1)
A 		41.2
(-0)
A 		4.6
(-3)
A 		20.9
(-1.7)
A 		78.2
(3)
A 		74
B 15.3
(-2.1)
A 		12.7
(-2.4)
A 		44.4
(1.1)
A 		7.6
(-3)
A 		61.3
(3)
A 		54.8
(2.3)
A 		54
C 30.6
(-1.8)
A 		13.7
(-3)
A 		18.1
(-2.7)
A 		23.7
(-2.3)
A 		97
(3)
A 		55.4
(0)
A 		83
avr 20.1
(-2) 		23
(-1.7) 		34.6
(-0.3) 		12
(-3) 		59.7
(2.6) 		62.8
(3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.5
(-2.9)
A 		3.4
(-3)
A 		11.1
(2)
A 		12.6
(3)
A 		9
B 6.8
(-2.2)
A 		5.5
(-3)
A 		15.6
(3)
A 		8.5
(-1.2)
A 		10
C 14.1
(2.5)
A 		4
(-3)
A 		15.1
(3)
A 		13.4
(2.1)
A 		11
avr 8.1
(-0.6) 		4.3
(-3) 		13.9
(3) 		11.5
(1.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 2.7
(-2.5)
A 		15.1
(1.7)
A 		9
(-0.4)
A 		1.2
(-3)
A 		6.3
(-1.3)
A 		19.1
(3)
A 		18
B 5.3
(-2.1)
A 		4.2
(-2.4)
A 		10.8
(-0.7)
A 		2
(-3)
A 		24.9
(3)
A 		20.4
(1.8)
A 		23
C 11.3
(-1.4)
A 		4.2
(-3)
A 		4.6
(-2.9)
A 		4.8
(-2.9)
A 		31.4
(3)
A 		18.5
(0.2)
A 		27
avr 6.4
(-1.8) 		7.8
(-1.3) 		8.1
(-1.2) 		2.7
(-3) 		20.9
(3) 		19.3
(2.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186139_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5433
Sequence Type Exemplar sequence
Representative Public ID F02E11.5 NCBI
Target Description F02E11.5 /REP_DB=WormBase Gene ID /WP=CE09196 /TR=O16575 /GB=AAB66052.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062095(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062095 NCBI Caenorhabditis elegans F02E11.5 (F02E11.5) mRNA, complete cds. 11/11 None
F02E11.5 ENSEMBL cdna:known chromosome:CEL140:II:3283687:3284653:-1 gene:F02E11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020861 8/11 Cross Hyb Matching Probes None
GENEFINDER00000020877 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3283685-3284652(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02E11.5
Entrez Gene 184099 Entrez gene
SwissProt O16575 EMBL-EBI
WormBase CE09196 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66052 Hypothetical protein F02E11.5 [Caenorhabditis elegans] ref|NP_494496.1| F02E11.5 [Caenorhabditis elegans] 1.0E-114
blast CAE58671 Hypothetical protein CBG01844 [Caenorhabditis briggsae] emb|CAE58668.1| Hypothetical protein CBG01837 [Caenorhabditis briggsae] 9.0E-78
blast CAE58674 Hypothetical protein CBG01847 [Caenorhabditis briggsae] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.7E-59
Sequence
Target Sequence 
>C. ELEGANS:186139_AT
taattcttctcgccgtggtggcaagcgtcagtgtctatgggcaattctcgaaagccggac
agaaagccatcgtcgatgcccataatacgctgagatcttccattgccaaaggcacctatg
tggcgaataagaccaggaaggagccgggaagcaatattttgaaaatgaaatgggacccca
ctatcgccaaatccgcccaagcctacgccaacacatgccccactggacacggaaaatcaa
agtacggagaaaatctctactggcgttggtctggcgctgttataaagagcattgacgatt
acggagtgcgcgcttcaggcgcatgggctagcgagttccaaaagtatggatggaaaacca
acaagctggattcggctctcttcaagactggcatcggacacgctactcaaatggcgtggg
cttcgactggatcgatcgggtgtggcgtgaaaaattgcgggatggataagaataaaatgt
acaaggttgccgtggtgtgtcagtacagtgcgcgcggaaacatgatcaacaacaacatct
acaccgccggaaagacatgctccgcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTCTTCTCGCCGTGGTGGCAAG 655 633 23 Antisense
GCCATCGTCGATGCCCATAATACGC 94 281 88 Antisense
TAATACGCTGAGATCTTCCATTGCC 145 635 105 Antisense
TGAAATGGGACCCCACTATCGCCAA 587 571 188 Antisense
AAATCTCTACTGGCGTTGGTCTGGC 488 117 273 Antisense
TTGACGATTACGGAGTGCGCGCTTC 450 705 314 Antisense
CAACAAGCTGGATTCGGCTCTCTTC 318 189 381 Antisense
TCAAGACTGGCATCGGACACGCTAC 215 631 404 Antisense
CAAATGGCGTGGGCTTCGACTGGAT 608 191 430 Antisense
GCCGTGGTGTGTCAGTACAGTGCGC 407 283 511 Antisense
ACCGCCGGAAAGACATGCTCCGCGT 175 89 565 Antisense
Sequence Source Affymetrix Proprietary Database