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[186138_s_at]

Description T05B4.11 /REP_DB=WormBase Gene ID /WP=CE13213 /TR=O16420 /GB=AAC69060.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 11      6grp_total > 06      4grp_total > 51      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1606
1 2 3 4 range
A 894.2
(-0.7)
P 		1840.6
(3)
P 		775.3
(-1.2)
P 		318.8
(-3)
P 		1522
B 961.4
(0.6)
P 		1440.2
(3)
P 		963.4
(0.6)
P 		244.9
(-3)
P 		1195
C 781.4
(-0.3)
P 		1455.7
(3)
P 		802.6
(-0.2)
P 		234.3
(-3)
P 		1221
avr 879
(-0.2) 		1578.8
(3) 		847.1
(-0.3) 		266
(-3) 		1313

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3654
1 2 3 4 5 6 range
A 3916
(3)
P 		1755.3
(-0.6)
P 		709.2
(-2.3)
P 		456.1
(-2.8)
P 		311.9
(-3)
P 		316.8
(-3)
P 		3604
B 2487.6
(3)
P 		2002.3
(1.7)
P 		992.1
(-1)
P 		452.1
(-2.5)
P 		348.8
(-2.8)
P 		262
(-3)
P 		2226
C 3095.2
(3)
P 		1931.3
(0.5)
P 		963.6
(-1.6)
P 		449.6
(-2.7)
P 		396.3
(-2.8)
P 		312.2
(-3)
P 		2783
avr 3166.3
(3) 		1896.3
(0.3) 		888.3
(-1.8) 		452.6
(-2.7) 		352.3
(-2.9) 		297
(-3) 		2869
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 379
1 2 3 4 range
A 325.6
(1.7)
P 		399.6
(3)
P 		202.7
(-0.3)
P 		46.7
(-3)
P 		353
B 306.6
(2)
P 		355.7
(3)
P 		223.2
(0.4)
P 		52.2
(-3)
P 		304
C 258.7
(0.5)
P 		418.5
(3)
P 		279.7
(0.8)
P 		39.5
(-3)
P 		379
avr 297
(1.4) 		391.3
(3) 		235.2
(0.3) 		46.1
(-3) 		345

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1070
1 2 3 4 5 6 range
A 721.9
(3)
P 		624.3
(2.1)
P 		154.5
(-2.3)
P 		115.7
(-2.6)
P 		94.1
(-2.8)
P 		77.1
(-3)
P 		645
B 865.6
(3)
P 		666.5
(1.4)
P 		240.9
(-1.9)
P 		119.8
(-2.8)
P 		141.7
(-2.7)
P 		97.7
(-3)
P 		768
C 1147.3
(3)
P 		589.3
(-0.2)
P 		245.2
(-2.1)
P 		90.4
(-3)
P 		128.3
(-2.8)
P 		104.5
(-2.9)
P 		1057
avr 911.6
(3) 		626.7
(0.9) 		213.5
(-2.1) 		108.6
(-2.9) 		121.4
(-2.8) 		93.1
(-3) 		819
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186138_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15296
Sequence Type Exemplar sequence
Representative Public ID T05B4.11 NCBI
Target Description T05B4.11 /REP_DB=WormBase Gene ID /WP=CE13213 /TR=O16420 /GB=AAC69060.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071747(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071747 NCBI Caenorhabditis elegans T05B4.11 (T05B4.11) mRNA, complete cds. 11/11 None
SNAP00000031064 ENSEMBL cdna:SNAP chromosome:CEL140:V:4121421:4122282:-1 11/11 None
GENEFINDER00000031078 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4121421:4122282:-1 11/11 None
T05B4.11 ENSEMBL cdna:known chromosome:CEL140:V:4121301:4122328:-1 gene:T05B4.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4121420-4122282(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05B4.11
Entrez Gene 178811 Entrez gene
SwissProt O16420 EMBL-EBI
WormBase CE13213 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69060 Hypothetical protein T05B4.11 [Caenorhabditis elegans] ref|NP_504148.1| T05B4.11 [Caenorhabditis elegans] 1.0E-132
blast CAE65455 Hypothetical protein CBG10420 [Caenorhabditis briggsae] 1.0E-114
blast AAC69058 Hypothetical protein T05B4.8 [Caenorhabditis elegans] ref|NP_504145.1| T05B4.8 [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 9.3
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.8E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.3E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.3E-14
Sequence
Target Sequence 
>C. ELEGANS:186138_S_AT
gaccattggcttgctataccactgctacagtcaccccagcagctgtcgtacttgacatga
agactgctgcccttgcaagttgcccaaagacttgtggattctgctgcaacacagatgcct
tcaactgcaagaacgctgattacccacgtctcaactgtgccacaatcaccaacagccaat
gcaactctccagcctggagaaacatcatcgccgctgattgcccatctgcctgcggattct
gcggacaaggaggatgtgtcgatgccgtcaccaactgcggaaacgacttgagcatctgcc
aaaacattggaatgcaaagcttcgtcaatacttactgccaaaagagttgcggacgttgcc
catctacaaccacttccggttacaacaacggaggaggttcatgcacatcatacgtcgccg
acagctcttccaactgtgcctcgtgggctaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCATTGGCTTGCTATACCACTGC 603 383 233 Antisense
CCCCAGCAGCTGTCGTACTTGACAT 606 259 266 Antisense
CTGCCCTTGCAAGTTGCCCAAAGAC 270 237 299 Antisense
GATGCCTTCAACTGCAAGAACGCTG 393 415 346 Antisense
ATCACCAACAGCCAATGCAACTCTC 258 29 397 Antisense
AGCCTGGAGAAACATCATCGCCGCT 98 83 423 Antisense
GCCTGCGGATTCTGCGGACAAGGAG 73 283 460 Antisense
AGCTTCGTCAATACTTACTGCCAAA 453 77 550 Antisense
AAAAGAGTTGCGGACGTTGCCCATC 50 133 572 Antisense
GAGGTTCATGCACATCATACGTCGC 185 401 626 Antisense
TTCCAACTGTGCCTCGTGGGCTAAG 56 699 660 Antisense
Sequence Source Affymetrix Proprietary Database