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[186137_at]

Description Y44E3A.3 /REP_DB=WormBase Gene ID /WP=CE21928 /TR=Q9TXY8 /GB=AAC78230.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 64      6grp_total > 64      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 543
1 2 3 4 range
A 746.7
(-3)
P 		1123.1
(3)
P 		1068.1
(2.1)
P 		817.8
(-1.9)
P 		376
B 883.9
(-3)
P 		1075
(1.1)
P 		1162
(3)
P 		1042.9
(0.4)
P 		278
C 900.8
(-3)
P 		1012
(-1.3)
P 		972.7
(-1.9)
P 		1289.2
(3)
P 		388
avr 843.8
(-3) 		1070
(3) 		1067.6
(2.9) 		1050
(2.5) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 694
1 2 3 4 5 6 range
A 734.6
(-2.3)
P 		961.1
(0.8)
P 		1127.9
(3)
P 		1067.8
(2.2)
P 		681.7
(-3)
P 		976
(1)
P 		446
B 709.1
(-3)
P 		726.6
(-2.8)
P 		1376.1
(3)
P 		893.3
(-1.3)
P 		792.5
(-2.2)
P 		1046.4
(0)
P 		667
C 756.6
(-3)
P 		772.6
(-2.8)
P 		1302.9
(3)
P 		969.9
(-0.7)
P 		864.1
(-1.8)
P 		990.9
(-0.4)
P 		546
avr 733.4
(-3) 		820.1
(-2) 		1269
(3) 		977
(-0.3) 		779.4
(-2.5) 		1004.4
(0) 		536
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 271.9
(2.7)
P 		243.8
(1.7)
P 		279.2
(3)
P 		119.7
(-3)
P 		160
B 281.9
(3)
P 		265.5
(1.4)
P 		269.3
(1.7)
P 		222.2
(-3)
P 		60
C 298.2
(1)
P 		290.9
(0.6)
P 		339
(3)
P 		217.4
(-3)
P 		122
avr 284
(2.4) 		266.7
(1.4) 		295.8
(3) 		186.4
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 135.4
(-3)
P 		341.8
(3)
P 		245.6
(0.2)
P 		270.8
(0.9)
P 		205.7
(-1)
P 		237.6
(-0)
P 		206
B 246.7
(-2.6)
P 		241.9
(-2.8)
P 		334.2
(0.8)
P 		236.6
(-3)
P 		322
(0.3)
P 		390.2
(3)
P 		154
C 280.4
(0.7)
P 		235.7
(-1.2)
P 		331.6
(3)
P 		195
(-3)
P 		279.6
(0.7)
P 		331.7
(3)
P 		137
avr 220.8
(-3) 		273.1
(0.2) 		303.8
(2) 		234.1
(-2.2) 		269.1
(-0.1) 		319.8
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186137_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.197
Sequence Type Exemplar sequence
Representative Public ID Y44E3A.3 NCBI
Target Description Y44E3A.3 /REP_DB=WormBase Gene ID /WP=CE21928 /TR=Q9TXY8 /GB=AAC78230.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058741(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058741 NCBI Caenorhabditis elegans Y44E3A.3 (Y44E3A.3) mRNA, complete cds. 11/11 None
SNAP00000005138 ENSEMBL cdna:SNAP chromosome:CEL140:I:3318056:3318576:-1 11/11 None
GENEFINDER00000005143 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3318056:3318576:-1 11/11 None
Y44E3A.3 ENSEMBL cdna:known chromosome:CEL140:I:3317977:3318585:-1 gene:Y44E3A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3318055-3318576(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y44E3A.3
Entrez Gene 189905 Entrez gene
SwissProt Q9TXY8 EMBL-EBI
WormBase CE21928 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491142 Y44E3A.3 [Caenorhabditis elegans] gb|AAC78230.1| Hypothetical protein Y44E3A.3 [Caenorhabditis elegans] 4.0E-56
blast CAE68986 Hypothetical protein CBG14970 [Caenorhabditis briggsae] 8.0E-36
blast AAF16695 thioredoxin-like protein [Manduca sexta] 1.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 1.1E-28
Sequence
Target Sequence 
>C. ELEGANS:186137_AT
tttgccgagaagaaaacccagccagtgattctatttttcacggcttcatggtgcggtccg
tgccaaatgatcaagccacgtgtggaggagctggccgccgagcacaaggatcgcctatcg
atccttaaaattgatgtggacgagtgtgacggtgtcggtgaagaatatgagatcaactcg
atgcccaccttccttctgattgtcgacggaatcaagaaggatcagttcagtggagcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCCGAGAAGAAAACCCAGCCAG 104 667 55 Antisense
AACCCAGCCAGTGATTCTATTTTTC 416 143 69 Antisense
ATTCTATTTTTCACGGCTTCATGGT 303 11 82 Antisense
CACGGCTTCATGGTGCGGTCCGTGC 257 197 93 Antisense
GCGGTCCGTGCCAAATGATCAAGCC 144 293 107 Antisense
AGCCACGTGTGGAGGAGCTGGCCGC 431 83 128 Antisense
CCGAGCACAAGGATCGCCTATCGAT 2 257 152 Antisense
ATCGCCTATCGATCCTTAAAATTGA 269 35 164 Antisense
CGAGTGTGACGGTGTCGGTGAAGAA 296 207 195 Antisense
ACCTTCCTTCTGATTGTCGACGGAA 468 85 241 Antisense
AGAAGGATCAGTTCAGTGGAGCGAA 25 75 269 Antisense
Sequence Source Affymetrix Proprietary Database