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[186136_at]

Description T10H10.2 /REP_DB=WormBase Gene ID /WP=CE13577 /TR=P91442 /GB=AAB37989.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 81      4grp_high_8_8 > 59      6grp_highest_nonorm > 62      6grp_total > 81      4grp_total > 60      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 336
1 2 3 4 range
A 316.2
(1.2)
P 		419.2
(3)
P 		404.2
(2.7)
P 		83
(-3)
A 		336
B 359.9
(3)
P 		323.1
(2.2)
P 		357.9
(3)
P 		96
(-3)
P 		264
C 362.5
(2.1)
P 		348.6
(1.8)
P 		401.1
(3)
P 		147.5
(-3)
A 		254
avr 346.2
(2.1) 		363.6
(2.5) 		387.7
(3) 		108.8
(-3) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 472
1 2 3 4 5 6 range
A 347.7
(-0.4)
P 		375.9
(0)
P 		359.6
(-0.2)
P 		570.9
(3)
P 		559.9
(2.8)
P 		179.1
(-3)
P 		392
B 262.1
(-2.3)
P 		356.4
(-1)
P 		354.2
(-1)
P 		634.1
(3)
P 		537
(1.6)
P 		213.8
(-3)
P 		420
C 362.1
(-0.5)
P 		387.5
(-0.2)
P 		547.8
(1.9)
P 		636.9
(3)
P 		508.7
(1.4)
P 		165
(-3)
P 		472
avr 324
(-1.1) 		373.3
(-0.4) 		420.5
(0.3) 		614
(3) 		535.2
(1.9) 		186
(-3) 		428
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 115.1
(3)
P 		91
(1.6)
P 		105.7
(2.5)
P 		12.2
(-3)
A 		103
B 114.8
(3)
P 		79.8
(0.8)
P 		82.9
(1)
P 		20.5
(-3)
P 		94
C 120
(2)
P 		100.2
(0.9)
P 		139.8
(3)
P 		24.9
(-3)
A 		115
avr 116.6
(3) 		90.3
(1.4) 		109.5
(2.6) 		19.2
(-3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 64.1
(-2)
P 		133.7
(1.3)
P 		78.3
(-1.3)
P 		144.8
(1.8)
P 		169
(3)
P 		43.6
(-3)
P 		125
B 91.2
(-2.5)
P 		118.6
(-1.3)
P 		86
(-2.7)
P 		168
(0.8)
P 		218.2
(3)
P 		79.7
(-3)
P 		139
C 134.2
(1.3)
P 		118.2
(0.5)
P 		139.4
(1.6)
P 		128.1
(1)
P 		164.6
(3)
P 		55.2
(-3)
P 		109
avr 96.5
(-1.2) 		123.5
(0.1) 		101.2
(-1) 		147
(1.2) 		183.9
(3) 		59.5
(-3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186136_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18140
Sequence Type Exemplar sequence
Representative Public ID T10H10.2 NCBI
Target Description T10H10.2 /REP_DB=WormBase Gene ID /WP=CE13577 /TR=P91442 /GB=AAB37989.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076018(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076018 NCBI Caenorhabditis elegans T10H10.2 (T10H10.2) mRNA, complete cds. 11/11 None
SNAP00000007561 ENSEMBL cdna:SNAP chromosome:CEL140:X:2294743:2297960:1 11/11 None
GENEFINDER00000007565 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2294743:2297960:1 11/11 None
T10H10.2 ENSEMBL cdna:known chromosome:CEL140:X:2294743:2298144:1 gene:T10H10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2294742-2297960(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10H10.2
Entrez Gene 180538 Entrez gene
SwissProt P91442 EMBL-EBI
WormBase CE13577 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37989 Hypothetical protein T10H10.2 [Caenorhabditis elegans] ref|NP_508419.1| T10H10.2 [Caenorhabditis elegans] 0.0
blast CAE58895 Hypothetical protein CBG02142 [Caenorhabditis briggsae] 0.0
blast CAE62199 Hypothetical protein CBG06249 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR006863 EMBL-EBI Erv1/Alr 3.7E-9
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 3.4E-14
Pfam IPR006863 EMBL-EBI Erv1/Alr 3.7E-9
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 5.0E-10
Sequence
Target Sequence 
>C. ELEGANS:186136_AT
gaagaagaagctggccatcctttcccactgaacacaaactgggaacactgtgccgggtca
tcgactcaatacagagggtacacatgtggtttgtggaccacattccatgctctcacagtt
tctgcattcaagaactggcaaaataagactaatgatattacccttccacttccaccactc
caatcaattcgtgattgggtcggctcattctttggatgcaatcactgtagggatcatttc
ttgaaaatgaccactgacacatttaaaattgaagctaatgttcgccgccctgaagatgtt
tatctgtacttatggaaggctcacaacaaggtgaacgccagactacacggccgagaaact
gaagatccaaagttcccgaaataccaattcccggccaaattcctgtgtgtagactgtaac
gcaaaaggattcttgaacgaagatgatactcaacctttcctcattgactattactccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAAGAAGCTGGCCATCCTTTCC 175 341 1216 Antisense
AACTGGGAACACTGTGCCGGGTCAT 531 137 1252 Antisense
TTCCATGCTCTCACAGTTTCTGCAT 677 699 1318 Antisense
ACTAATGATATTACCCTTCCACTTC 328 101 1363 Antisense
TTCCACCACTCCAATCAATTCGTGA 462 701 1385 Antisense
GTCGGCTCATTCTTTGGATGCAATC 111 473 1414 Antisense
TCGCCGCCCTGAAGATGTTTATCTG 141 599 1497 Antisense
AAGGTGAACGCCAGACTACACGGCC 219 159 1543 Antisense
TTCCCGGCCAAATTCCTGTGTGTAG 105 699 1603 Antisense
AGATGATACTCAACCTTTCCTCATT 573 67 1656 Antisense
TTTCCTCATTGACTATTACTCCAGA 66 671 1671 Antisense
Sequence Source Affymetrix Proprietary Database