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[186135_at]

Description C24A11.5 /REP_DB=WormBase Gene ID /WP=CE08346 /TR=P91088 /GB=AAB37673.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 0      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 1.8
(-3)
A 		3.9
(-2.6)
A 		30.2
(3)
A 		24.5
(1.8)
A 		28
B 20.4
(1.3)
A 		10.4
(-1.1)
A 		2.8
(-3)
A 		27.4
(3)
A 		25
C 19.6
(-2)
A 		19.5
(-2)
A 		17.2
(-3)
A 		31.7
(3)
A 		15
avr 13.9
(-2.1) 		11.3
(-3) 		16.7
(-1) 		27.9
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 46.5
(3)
A 		13
(-1.6)
A 		27.4
(0.4)
A 		2.9
(-3)
A 		36.8
(1.7)
P 		45.2
(2.8)
P 		44
B 34.6
(3)
P 		13.1
(-3)
A 		24
(0)
A 		27.1
(0.9)
A 		18.8
(-1.4)
A 		18.8
(-1.4)
A 		22
C 7.8
(-2)
A 		26.3
(0.5)
A 		35.9
(1.8)
A 		44.3
(3)
M 		10.9
(-1.6)
A 		0.7
(-3)
A 		44
avr 29.6
(3) 		17.5
(-3) 		29.1
(2.8) 		24.8
(0.6) 		22.2
(-0.7) 		21.6
(-1) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.6
(-3)
A 		0.9
(-2.8)
A 		7.9
(3)
A 		3.6
(-0.5)
A 		7
B 6.5
(3)
A 		2.6
(-1)
A 		0.7
(-3)
A 		5.8
(2.3)
A 		6
C 6.5
(3)
A 		5.6
(-1.5)
A 		6
(0.5)
A 		5.3
(-3)
A 		1
avr 4.5
(1.7) 		3
(-3) 		4.9
(3) 		4.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8.6
(1.6)
A 		4.6
(-0.8)
A 		6
(0.1)
A 		0.7
(-3)
A 		11.1
(3)
P 		11
(2.9)
P 		10
B 12
(3)
P 		4.3
(-3)
A 		5.8
(-1.8)
A 		7.2
(-0.7)
A 		7.6
(-0.4)
A 		7
(-0.9)
A 		8
C 2.9
(-1.2)
A 		8
(2.3)
A 		9.1
(3)
A 		8.9
(2.9)
M 		3.5
(-0.8)
A 		0.2
(-3)
A 		9
avr 7.8
(3) 		5.6
(-3) 		7
(0.8) 		5.6
(-3) 		7.4
(1.9) 		6.1
(-1.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186135_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2358
Sequence Type Exemplar sequence
Representative Public ID C24A11.5 NCBI
Target Description C24A11.5 /REP_DB=WormBase Gene ID /WP=CE08346 /TR=P91088 /GB=AAB37673.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059182(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059182 NCBI Caenorhabditis elegans C24A11.5 (C24A11.5) mRNA, complete cds. 11/11 None
C24A11.5 ENSEMBL cdna:known chromosome:CEL140:I:5384642:5385740:-1 gene:C24A11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5384641-5385740(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24A11.5
Entrez Gene 182833 Entrez gene
SwissProt P91088 EMBL-EBI
WormBase CE08346 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37673 Hypothetical protein C24A11.5 [Caenorhabditis elegans] ref|NP_491583.1| C24A11.5 [Caenorhabditis elegans] 2.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491583.1 1 15-37
C24A11.5 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:186135_AT
tgaaacctctcattcgttatcacctcttctccgttttgcaactttttgtcggaaaagttt
tggcacttggaacaatcttaaattttgttgaaatcgaatttcggggtgcatttagaaaag
ttgccaaaaaatttcaccaatttccaaagttgcgcactcaatatttcagcgaaaaacagt
tgccaacgatagaagacgaaacaccgacaacaaaatcaaatattttgttcatttctcaca
ttttcgcccaattccttctggaatcagctgtcattaaggaattagtgaaactttggctct
ttttctttgattcccattttttgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAACCTCTCATTCGTTATCACCT 285 573 23 Antisense
TTCTCCGTTTTGCAACTTTTTGTCG 252 687 49 Antisense
AGTTTTGGCACTTGGAACAATCTTA 515 61 78 Antisense
AATCGAATTTCGGGGTGCATTTAGA 554 163 114 Antisense
AAAGTTGCGCACTCAATATTTCAGC 332 123 168 Antisense
TTCAGCGAAAAACAGTTGCCAACGA 651 651 187 Antisense
GACGAAACACCGACAACAAAATCAA 279 379 217 Antisense
TTTTCGCCCAATTCCTTCTGGAATC 383 675 263 Antisense
GAATCAGCTGTCATTAAGGAATTAG 539 327 283 Antisense
GAAACTTTGGCTCTTTTTCTTTGAT 190 357 309 Antisense
TTTCTTTGATTCCCATTTTTTGATA 78 673 324 Antisense
Sequence Source Affymetrix Proprietary Database