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[186134_at]

Description Y62H9A.12 /REP_DB=WormBase Gene ID /WP=CE19248 /TR=Q9XWS8 /GB=CAA21567.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 92      4grp_high_8_8 > 15      6grp_highest_nonorm > 90      6grp_total > 94      4grp_total > 08      6grp_high1_sub > 04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 43.5
(-3)
P 		62
(0.2)
P 		78.1
(3)
P 		60
(-0.1)
A 		35
B 56.1
(-3)
P 		87.1
(3)
P 		85.5
(2.7)
P 		68
(-0.7)
P 		31
C 120.6
(3)
P 		71.3
(-2.6)
P 		67.9
(-3)
P 		119.1
(2.8)
P 		53
avr 73.4
(-3) 		73.5
(-2.9) 		77.2
(-0.5) 		82.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 94.7
(0.8)
P 		53.8
(-3)
P 		83.5
(-0.2)
P 		79.5
(-0.6)
P 		118.3
(3)
P 		103.2
(1.6)
P 		65
B 88.3
(1.7)
P 		103
(3)
P 		36.2
(-3)
P 		91.6
(2)
P 		100.4
(2.8)
P 		78.4
(0.8)
P 		67
C 74.9
(-0.8)
P 		87
(0)
P 		43
(-3)
P 		130.8
(3)
P 		96.8
(0.7)
P 		96.4
(0.6)
P 		88
avr 86
(0.7) 		81.3
(0.2) 		54.2
(-3) 		100.6
(2.5) 		105.2
(3) 		92.7
(1.5) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 15.9
(0.7)
P 		13.5
(-0.6)
P 		20.4
(3)
P 		8.8
(-3)
A 		12
B 17.9
(-0.1)
P 		21.5
(3)
P 		19.8
(1.5)
P 		14.5
(-3)
P 		7
C 39.9
(3)
P 		20.5
(-2.9)
P 		23.7
(-1.9)
P 		20.1
(-3)
P 		20
avr 24.6
(3) 		18.5
(-0.6) 		21.3
(1) 		14.5
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 17.5
(-3)
P 		19.1
(-2.5)
P 		18.2
(-2.8)
P 		20.2
(-2.1)
P 		35.7
(3)
P 		25.1
(-0.5)
P 		18
B 30.7
(1.1)
P 		34.3
(1.8)
P 		8.8
(-3)
P 		24.3
(-0.1)
P 		40.8
(3)
P 		29.2
(0.8)
P 		32
C 27.8
(1.7)
P 		26.5
(1.4)
P 		10.9
(-3)
P 		26.3
(1.3)
P 		31.3
(2.7)
P 		32.3
(3)
P 		21
avr 25.3
(0.3) 		26.6
(0.6) 		12.6
(-3) 		23.6
(-0.2) 		35.9
(3) 		28.9
(1.2) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186134_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17219
Sequence Type Exemplar sequence
Representative Public ID Y62H9A.12 NCBI
Target Description Y62H9A.12 /REP_DB=WormBase Gene ID /WP=CE19248 /TR=Q9XWS8 /GB=CAA21567.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077592(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077592 NCBI Caenorhabditis elegans Y62H9A.12 (Y62H9A.12) mRNA, complete cds. 11/11 None
GENEFINDER00000025477 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11914077:11915479:1 11/11 None
Y62H9A.12 ENSEMBL cdna:known chromosome:CEL140:X:11914077:11915479:1 gene:Y62H9A.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025464 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11914076-11915479(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.12
Entrez Gene 190467 Entrez gene
SwissProt Q9XWS8 EMBL-EBI
WormBase CE19248 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21567 Hypothetical protein Y62H9A.12 [Caenorhabditis elegans] ref|NP_509993.1| Y62H9A.12 [Caenorhabditis elegans] 1.0E-143
blast CAE69404 Hypothetical protein CBG15553 [Caenorhabditis briggsae] 6.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509993.1 1 178-200
Y62H9A.12 1 178-200
GENEFINDER00000025477 1 178-200
Sequence
Target Sequence 
>C. ELEGANS:186134_AT
attgcctactaccgccaggaaaacaaacaaaatgagttgacacttgtttttgatcaaaac
gggacccttttcttgctcaatgctaccagaatcgcttgtgacaatggatggaacccagat
ggagccatacacttcaaagtctacaccgagaacatctcgacgtgcaagtttaccttcaag
acgagcggagctcctgaaaaaccagaagactatctcttcatcgataccccaatccgccaa
ttctactacttccaaaagcacatcaaacagcctcctcacaattttgaaaaggacaacacc
gtgttatatcaattgggctcattttttctgcttgtggctatcttggctatcgccatgctt
ataattaaatgcgttaattcgcacggattgggtgacgacaaaactgacgatgcactggaa
atgaagaaaggaaccgtggagctgcagaacgaggagcagtcaaacactccgtattctaca
gattccgacagaaccgagttctcattgccagcacaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCCTACTACCGCCAGGAAAACA 3 7 247 Antisense
CCTTTTCTTGCTCAATGCTACCAGA 394 269 312 Antisense
ATGCTACCAGAATCGCTTGTGACAA 262 43 326 Antisense
GATGGAGCCATACACTTCAAAGTCT 592 405 364 Antisense
CATCTCGACGTGCAAGTTTACCTTC 387 211 399 Antisense
TTACCTTCAAGACGAGCGGAGCTCC 398 681 416 Antisense
ATCAAACAGCCTCCTCACAATTTTG 127 27 508 Antisense
TCAATTGGGCTCATTTTTTCTGCTT 629 633 555 Antisense
TGCTTGTGGCTATCTTGGCTATCGC 529 579 575 Antisense
CAGTCAAACACTCCGTATTCTACAG 597 207 703 Antisense
CCGAGTTCTCATTGCCAGCACAAAA 679 263 740 Antisense
Sequence Source Affymetrix Proprietary Database