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[186133_s_at]

Description F39C12.1 /REP_DB=WormBase Gene ID /WP=CE10092 /TR=O61201 /GB=AAB94194.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 50      6grp_total > 26      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 541
1 2 3 4 range
A 807
(3)
P 		337.6
(-3)
P 		339
(-3)
P 		504.7
(-0.9)
P 		469
B 724.4
(3)
P 		399.8
(-1.6)
P 		296.9
(-3)
P 		566.6
(0.8)
P 		428
C 837.7
(3)
P 		366.2
(-3)
P 		364.5
(-3)
P 		517.3
(-1.1)
P 		473
avr 789.7
(3) 		367.9
(-2.5) 		333.5
(-3) 		529.5
(-0.4) 		456

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 447
1 2 3 4 5 6 range
A 754
(3)
P 		643.2
(1.2)
P 		376.1
(-3)
P 		414
(-2.4)
P 		398.4
(-2.6)
P 		541.9
(-0.4)
P 		378
B 633.5
(3)
P 		594.1
(2.3)
P 		392.2
(-1.4)
P 		487
(0.3)
P 		307.3
(-3)
P 		496.7
(0.5)
P 		326
C 730
(3)
P 		578.1
(-0.1)
P 		607.4
(0.5)
P 		446.9
(-2.7)
P 		431.2
(-3)
P 		466.4
(-2.3)
P 		299
avr 705.8
(3) 		605.1
(1.2) 		458.6
(-1.5) 		449.3
(-1.7) 		379
(-3) 		501.7
(-0.7) 		327
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 293.8
(3)
P 		73.3
(-3)
P 		88.6
(-2.6)
P 		73.9
(-3)
P 		221
B 231
(3)
P 		98.7
(-1.9)
P 		68.8
(-3)
P 		120.8
(-1.1)
P 		162
C 277.3
(3)
P 		105.3
(-2.4)
P 		127
(-1.7)
P 		87.2
(-3)
P 		190
avr 267.4
(3) 		92.4
(-3) 		94.8
(-2.9) 		94
(-2.9) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 139
(-0.7)
P 		228.8
(3)
P 		81.9
(-3)
P 		105
(-2.1)
P 		120.2
(-1.4)
P 		131.9
(-1)
P 		147
B 220.4
(3)
P 		197.7
(1.9)
P 		95.2
(-3)
P 		129
(-1.4)
P 		124.9
(-1.6)
P 		185.2
(1.3)
P 		125
C 270.6
(3)
P 		176.4
(-0.1)
P 		154.6
(-0.9)
P 		89.9
(-3)
P 		139.5
(-1.4)
P 		156.1
(-0.8)
P 		181
avr 210
(3) 		201
(2.5) 		110.6
(-2.8) 		108
(-3) 		128.2
(-1.8) 		157.7
(-0.1) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186133_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16834
Sequence Type Exemplar sequence
Representative Public ID F39C12.1 NCBI
Target Description F39C12.1 /REP_DB=WormBase Gene ID /WP=CE10092 /TR=O61201 /GB=AAB94194.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076424(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076424 NCBI Caenorhabditis elegans F39C12.1 (F39C12.1) mRNA, complete cds. 11/11 None
SNAP00000037641 ENSEMBL cdna:SNAP chromosome:CEL140:X:4834975:4853033:-1 11/11 None
GENEFINDER00000037676 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4834975:4853033:-1 11/11 None
F39C12.1 ENSEMBL cdna:known chromosome:CEL140:X:4834864:4853033:-1 gene:F39C12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4834975-4853034(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F39C12.1
Entrez Gene 180759 Entrez gene
SwissProt O61201 EMBL-EBI
WormBase CE10092 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94194 Hypothetical protein F39C12.1 [Caenorhabditis elegans] ref|NP_508825.1| F39C12.1 [Caenorhabditis elegans] 0.0
blast CAE68655 Hypothetical protein CBG14553 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186133_S_AT
gaaaggtcgcaacctgggtcgtttgggaagaacactgtgcgtctcgacaatgccacttat
tgagcaggacaaggacaaaaagagatggccaaatgcgaagacaatgtcgccaaggctaac
gtttgagaattatattgaaactctggatcccaccgagaataagatgttaatggcaaagga
tatcgaggaggagaagacggacatcactgtgcaagtccttccatctcgattcggttgctt
ccaatgtcgtttctccttaccgcgctgctgcgtctgtatgtgcccttatttgaatgacca
catggactttgcgctcaaagattacaatgaaagcttctcgcagttcagcatttgcaatat
ttgcaatcatggtggacacgtgaaccatatagcgacgtggttcgaaacggaaaagtattg
cccggtagccggttgcgactgtcgttgtcaacgatcgaagcagacaaagcatttgaaagc
aagacttcgtcgtcacatgcttctctctgcaaacatgcgtgccaaatctcatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGGTCGCAACCTGGGTCGTTTG 182 359 14715 Antisense
AGAACACTGTGCGTCTCGACAATGC 205 73 14743 Antisense
TTGAAACTCTGGATCCCACCGAGAA 406 679 14849 Antisense
GGACATCACTGTGCAAGTCCTTCCA 682 525 14913 Antisense
GTCTGTATGTGCCCTTATTTGAATG 383 471 14986 Antisense
TGACCACATGGACTTTGCGCTCAAA 85 571 15009 Antisense
GAAAGCTTCTCGCAGTTCAGCATTT 593 359 15043 Antisense
AAGTATTGCCCGGTAGCCGGTTGCG 311 155 15127 Antisense
GCCGGTTGCGACTGTCGTTGTCAAC 593 281 15142 Antisense
ATGCTTCTCTCTGCAAACATGCGTG 8 43 15211 Antisense
AAACATGCGTGCCAAATCTCATTTG 390 129 15225 Antisense
Sequence Source Affymetrix Proprietary Database