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[186132_at]

Description F36H12.2 /REP_DB=WormBase Gene ID /WP=CE09974 /TR=O76720 /GB=AAC26929.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 21.4
(-1.3)
A 		63.6
(3)
A 		4.2
(-3)
A 		55.5
(2.2)
A 		59
B 37.2
(-0.8)
A 		41.4
(-0.3)
A 		17.3
(-3)
A 		70.9
(3)
A 		54
C 37.9
(-3)
P 		46.2
(-2.1)
A 		47.3
(-2)
A 		95.9
(3)
A 		58
avr 32.2
(-1.9) 		50.4
(0.2) 		22.9
(-3) 		74.1
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 22.6
(-3)
A 		22.7
(-3)
A 		34.7
(-2.3)
P 		39.5
(-2)
A 		69.6
(-0.3)
M 		125.7
(3)
P 		103
B 49.1
(-2.2)
P 		43.3
(-2.5)
A 		34.6
(-3)
A 		76
(-0.8)
A 		105.1
(0.7)
P 		149.3
(3)
P 		115
C 25
(-3)
A 		58.4
(-1.6)
A 		46.5
(-2.1)
A 		69.7
(-1.1)
A 		99.5
(0.2)
P 		165.3
(3)
P 		140
avr 32.2
(-3) 		41.5
(-2.5) 		38.6
(-2.7) 		61.7
(-1.5) 		91.4
(0.1) 		146.8
(3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.8
(0.2)
A 		13.8
(3)
A 		1.1
(-3)
A 		8.1
(0.3)
A 		13
B 11.9
(1.3)
A 		10.2
(0.4)
A 		4
(-3)
A 		15.1
(3)
A 		11
C 12.6
(-3)
P 		13.3
(-1.9)
A 		16.5
(3)
A 		16.2
(2.5)
A 		4
avr 10.8
(0.7) 		12.4
(2.3) 		7.2
(-3) 		13.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 4.2
(-3)
A 		8.1
(-2.1)
A 		7.6
(-2.2)
P 		10
(-1.7)
A 		21
(0.8)
M 		30.6
(3)
P 		26
B 17.1
(-1.9)
P 		14.4
(-2.2)
A 		8.4
(-3)
A 		20.1
(-1.5)
A 		42.7
(1.4)
P 		55.7
(3)
P 		47
C 9.3
(-3)
A 		17.8
(-1.9)
A 		11.8
(-2.7)
A 		14
(-2.4)
A 		32.2
(-0)
P 		55.3
(3)
P 		46
avr 10.2
(-2.9) 		13.4
(-2.4) 		9.3
(-3) 		14.7
(-2.1) 		32
(0.6) 		47.2
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186132_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11053
Sequence Type Exemplar sequence
Representative Public ID F36H12.2 NCBI
Target Description F36H12.2 /REP_DB=WormBase Gene ID /WP=CE09974 /TR=O76720 /GB=AAC26929.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068367 NCBI Caenorhabditis elegans F36H12.2 (F36H12.2) mRNA, complete cds. 11/11 None
SNAP00000002646 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5274665:5275993:1 11/11 None
GENEFINDER00000002665 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5274522:5275993:1 11/11 None
F36H12.2 ENSEMBL cdna:known chromosome:CEL140:IV:5274665:5275993:1 gene:F36H12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5274670-5275999(+) 100.0 100.0
chrI:10816798-10818436(+) 91.64 91.64
Public Domain and Genome References
Gene Title
Ensembl F36H12.2
Entrez Gene 185394 Entrez gene
SwissProt O76720 EMBL-EBI
WormBase CE34854 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26929 Hypothetical protein F36H12.2 [Caenorhabditis elegans] ref|NP_500768.2| F36H12.2 [Caenorhabditis elegans] 0.0
blast CAE63910 Hypothetical protein CBG08481 [Caenorhabditis briggsae] 1.0E-128
blast AAC17527 Hypothetical protein C35E7.8 [Caenorhabditis elegans] ref|NP_492825.1| C35E7.8 [Caenorhabditis elegans] 1.0E-128
blast AAC17527 Hypothetical protein C35E7.8 [Caenorhabditis elegans] ref|NP_492825.1| C35E7.8 [Caenorhabditis elegans] 1.0E-115
Sequence
Target Sequence 
>C. ELEGANS:186132_AT
atcgatgtgctatttattcctgtaattggtgtgactgatgaggtcgaaaataatcgattt
ttgattgttgtgagagttaaagaaatctcggataaagtgtatcaaatttcatcgggaaga
atttacaatgagctggaaggacgtgtagtcgaaatgtcggatatgaatgaagctttccac
aaattaattgttgaacaatcaatttctgatattcaaactagacggggaagcatgttcatg
ttggaacctgaaccgtttctcgaggattcgccggttatatttacgggatcgaaggagatt
ctcagagaaaatcatgaaattcccaatattctcaaagaaaatagcactgaaagatctctc
tcccaatcgcttctcaatcttctcgacattcagaacattggctggatcttcttcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGATGTGCTATTTATTCCTGTAA 266 37 595 Antisense
TATTCCTGTAATTGGTGTGACTGAT 590 663 609 Antisense
AATGAGCTGGAAGGACGTGTAGTCG 593 163 721 Antisense
TAGACGGGGAAGCATGTTCATGTTG 56 649 813 Antisense
CATGTTGGAACCTGAACCGTTTCTC 444 205 831 Antisense
CCTGAACCGTTTCTCGAGGATTCGC 197 267 841 Antisense
CGAGGATTCGCCGGTTATATTTACG 497 249 855 Antisense
TACGGGATCGAAGGAGATTCTCAGA 617 647 876 Antisense
TCATGAAATTCCCAATATTCTCAAA 408 621 906 Antisense
CTTCTCAATCTTCTCGACATTCAGA 239 221 964 Antisense
AGAACATTGGCTGGATCTTCTTCGG 557 73 986 Antisense
Sequence Source Affymetrix Proprietary Database