[Home] | [Total List]

[186131_at]

Description K11G12.1 /REP_DB=WormBase Gene ID /WP=CE02823 /TR=Q21432 /GB=AAC46566.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 06      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 40      6grp_total > 05      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 928
1 2 3 4 range
A 1103
(3)
P 		1031.3
(2.4)
P 		1097
(2.9)
P 		420.8
(-3)
P 		682
B 1247
(2.6)
P 		1031.2
(1)
P 		1310.3
(3)
P 		458.1
(-3)
P 		852
C 1188.3
(2.4)
P 		1080.8
(1.7)
P 		1280.4
(3)
P 		381.9
(-3)
P 		899
avr 1179.4
(2.6) 		1047.8
(1.7) 		1229.2
(3) 		420.3
(-3) 		809

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 884
1 2 3 4 5 6 range
A 1185
(3)
P 		715.8
(-0.2)
P 		575.8
(-1.2)
P 		469
(-2)
P 		457.6
(-2)
P 		317.7
(-3)
P 		867
B 918.7
(3)
P 		604.8
(-0)
P 		520.4
(-0.9)
P 		600.3
(-0.1)
P 		531.1
(-0.8)
P 		300.8
(-3)
P 		618
C 778.4
(3)
P 		692.3
(1.8)
P 		608.1
(0.6)
P 		396.2
(-2.4)
P 		413.8
(-2.2)
P 		354.6
(-3)
P 		424
avr 960.7
(3) 		671
(0.3) 		568.1
(-0.7) 		488.5
(-1.5) 		467.5
(-1.7) 		324.4
(-3) 		636
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 385
1 2 3 4 range
A 401.6
(3)
P 		223.9
(-0.1)
P 		286.8
(1)
P 		61.6
(-3)
P 		340
B 397.7
(3)
P 		254.7
(0.1)
P 		303.6
(1.1)
P 		97.6
(-3)
P 		300
C 393.3
(2.2)
P 		310.7
(0.9)
P 		446.3
(3)
P 		64.4
(-3)
P 		382
avr 397.5
(3) 		263.1
(0.5) 		345.6
(2) 		74.5
(-3) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 218.4
(1.8)
P 		254.6
(3)
P 		125.4
(-1.4)
P 		119
(-1.6)
P 		138.1
(-0.9)
P 		77.3
(-3)
P 		177
B 319.6
(3)
P 		201.3
(-0.4)
P 		126.4
(-2.6)
P 		159
(-1.6)
P 		215.8
(-0)
P 		112.2
(-3)
P 		207
C 288.5
(3)
P 		211.3
(0.8)
P 		154.8
(-0.8)
P 		79.7
(-3)
P 		133.9
(-1.4)
P 		118.7
(-1.9)
P 		209
avr 275.5
(3) 		222.4
(1.2) 		135.5
(-1.9) 		119.2
(-2.4) 		162.6
(-0.9) 		102.7
(-3) 		173
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186131_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16854
Sequence Type Exemplar sequence
Representative Public ID K11G12.1 NCBI
Target Description K11G12.1 /REP_DB=WormBase Gene ID /WP=CE02823 /TR=Q21432 /GB=AAC46566.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029618(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029618 NCBI Caenorhabditis elegans Nematode AStacin protease family member (nas-11) (nas-11) mRNA, complete cds. 11/11 None
SNAP00000013739 ENSEMBL cdna:SNAP chromosome:CEL140:X:6713531:6716273:1 11/11 None
GENEFINDER00000013749 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6713531:6716254:1 11/11 None
K11G12.1a ENSEMBL cdna:known chromosome:CEL140:X:6713530:6716316:1 gene:K11G12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029619 7/11 Cross Hyb Matching Probes None
K11G12.1b 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180938 2 1 NM_001029618 186131_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6713506-6716273(+) 100.0 100.0
Public Domain and Genome References
Ensembl K11G12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46566 Nematode astacin protease protein 11, isoform a [Caenorhabditis elegans] ref|NP_001024789.1| Nematode AStacin protease family member (nas-11) [Caenorhabditis elegans] sp|Q21432|NAS11_CAEEL Zinc metalloproteinase nas-11 precursor (Nematode astacin 11) 0.0
blast CAE65778 Hypothetical protein CBG10873 [Caenorhabditis briggsae] 0.0
blast AAU05558 Nematode astacin protease protein 11, isoform b [Caenorhabditis elegans] ref|NP_001024790.1| Nematode AStacin protease family member (nas-11) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 4.7E-94
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 9.4E-14
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 4.7E-94
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 9.4E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.4E-10
Sequence
Target Sequence 
>C. ELEGANS:186131_AT
aagattcaaagagctcagttccccaccaactggatctcatattgtttactacaaagttga
cagtccgacattctgtggtctttcgtatgttggtcgagctgaccctgccaacccagttta
tcttagttttggatgtgacaataacaaaggagttgcaattcatgaaacaatgcatgcgct
cggagttgcccatcagcaccttcgcaatgatcgtgatcaatttattactattaattggag
taacattgatccacaacaatacgatgcatttgttgtggtggattcaaaactgtacacttc
atacggagtgaaatacgcatacgacagtatcatgcattacaacggttacactgctgctca
aaacattgcgattcctactatgaacccaaaaacaaactctgccgtgaatcttaaagttct
tggacaaaggcaaaagatggggacaaccgatattgaacttctgaaaaaaatgtattgtca
acctggatgcgatgacaaaaatgtttattgcggagcatgggctctcaaagacttgtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGATTCAAAGAGCTCAGTTCCCCA 463 155 1164 Antisense
GACAGTCCGACATTCTGTGGTCTTT 357 369 1222 Antisense
TTCTGTGGTCTTTCGTATGTTGGTC 395 693 1234 Antisense
GTATGTTGGTCGAGCTGACCCTGCC 610 455 1248 Antisense
CCCTGCCAACCCAGTTTATCTTAGT 193 259 1266 Antisense
ATGAAACAATGCATGCGCTCGGAGT 211 45 1325 Antisense
CCATCAGCACCTTCGCAATGATCGT 411 271 1353 Antisense
TACAACGGTTACACTGCTGCTCAAA 615 639 1501 Antisense
ATTGCGATTCCTACTATGAACCCAA 669 5 1528 Antisense
GAACCCAAAAACAAACTCTGCCGTG 463 343 1545 Antisense
GCATGGGCTCTCAAAGACTTGTGCA 291 311 1678 Antisense
Sequence Source Affymetrix Proprietary Database