[Home] | [Total List]

[186130_at]

Description F15B10.3 /REP_DB=WormBase Gene ID /WP=CE16989 /TR=O44167 /GB=AAB88351.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 6.3
(-3)
A 		9.3
(-2.9)
A 		14.6
(-2.6)
A 		130.7
(3)
A 		124
B 7.5
(-3)
A 		14.3
(3)
A 		8.9
(-1.8)
A 		13
(1.9)
A 		7
C 12.6
(-0.9)
A 		18.4
(1.7)
A 		8.1
(-3)
A 		21.2
(3)
A 		13
avr 8.8
(-3) 		14
(-2.3) 		10.5
(-2.8) 		55
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 13.9
(-3)
A 		14.8
(-2.9)
A 		12
(-3)
A 		31.5
(-2.6)
A 		77.3
(-1.7)
A 		325.4
(3)
P 		313
B 52.4
(-2.1)
A 		12.7
(-2.9)
A 		7.9
(-3)
A 		25.4
(-2.7)
A 		112.2
(-1)
A 		313.7
(3)
P 		306
C 8.2
(-3)
A 		16.7
(-2.9)
A 		19.5
(-2.8)
A 		42.4
(-2.4)
A 		116.8
(-1.1)
A 		359.4
(3)
P 		351
avr 24.8
(-2.8) 		14.7
(-3) 		13.1
(-3) 		33.1
(-2.6) 		102.1
(-1.3) 		332.8
(3) 		320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.3
(-2.9)
A 		2
(-3)
A 		3.8
(-2.4)
A 		19.1
(3)
A 		17
B 2.4
(-1.7)
A 		3.5
(3)
A 		2.1
(-3)
A 		2.8
(-0)
A 		1
C 4.2
(0.4)
A 		5.3
(3)
A 		2.8
(-3)
A 		3.6
(-1.1)
A 		3
avr 3
(-2.9) 		3.6
(-2.3) 		2.9
(-3) 		8.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 2.6
(-3)
A 		5.3
(-2.8)
A 		2.6
(-3)
A 		8
(-2.6)
A 		23.3
(-1.4)
A 		79.2
(3)
P 		77
B 18.2
(-2.2)
A 		4.2
(-2.9)
A 		1.9
(-3)
A 		6.7
(-2.7)
A 		45.6
(-0.7)
A 		117
(3)
P 		115
C 3
(-3)
A 		5.1
(-2.9)
A 		5
(-2.9)
A 		8.5
(-2.7)
A 		37.8
(-1.2)
A 		120.3
(3)
P 		117
avr 7.9
(-2.7) 		4.9
(-2.9) 		3.2
(-3) 		7.7
(-2.7) 		35.6
(-1.1) 		105.5
(3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186130_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10934
Sequence Type Exemplar sequence
Representative Public ID F15B10.3 NCBI
Target Description F15B10.3 /REP_DB=WormBase Gene ID /WP=CE16989 /TR=O44167 /GB=AAB88351.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068615(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068615 NCBI Caenorhabditis elegans F15B10.3 (F15B10.3) mRNA, complete cds. 11/11 None
SNAP00000005365 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6603273:6603842:1 11/11 None
GENEFINDER00000005372 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6603273:6603842:1 11/11 None
F15B10.3 ENSEMBL cdna:known chromosome:CEL140:IV:6603273:6603891:1 gene:F15B10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6603278-6603848(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15B10.3
Entrez Gene 177423 Entrez gene
SwissProt O44167 EMBL-EBI
WormBase CE16989 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB88351 Hypothetical protein F15B10.3 [Caenorhabditis elegans] ref|NP_501016.1| F15B10.3 [Caenorhabditis elegans] 3.0E-95
blast AAB09151 Hypothetical protein F38A5.7 [Caenorhabditis elegans] ref|NP_501015.1| F38A5.7 [Caenorhabditis elegans] 5.0E-64
blast CAE61507 Hypothetical protein CBG05406 [Caenorhabditis briggsae] 2.0E-33
Sequence
Target Sequence 
>C. ELEGANS:186130_AT
atgccatcctgcgagatcaatctcatcttcaatgactctgaggagccagtcaccctacgt
gatacggggatcattatgctagttccagtgattcttcggtcggttcagtctgagttcccc
gactttgagaatcaagataacgtcaaggttacttctccactttcaattccgttcaataag
aaggcaggtgtcttcctcttcgaatatattcaaaaatatgttccaccaaatgatgataca
atccacgaattgacagtcgtcgagaactacaaagaagctggacagaagactttggatgag
ctcaaagaaatcattgagctagccaacttcttcgagtgtactgatttcatggaatgtttg
ggatttgtgatcggaaagaagttggaagacaaatcagttgaggagatcgctgcgtacatg
ggtgtggaatgtaatgcaccgggacactttttcgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCATCCTGCGAGATCAATCTCA 434 41 13 Antisense
ATGACTCTGAGGAGCCAGTCACCCT 526 45 44 Antisense
GCTAGTTCCAGTGATTCTTCGGTCG 151 303 90 Antisense
ATTCTTCGGTCGGTTCAGTCTGAGT 564 11 103 Antisense
CTGAGTTCCCCGACTTTGAGAATCA 561 237 122 Antisense
TAACGTCAAGGTTACTTCTCCACTT 303 637 150 Antisense
CTCCACTTTCAATTCCGTTCAATAA 646 235 167 Antisense
GGTGTCTTCCTCTTCGAATATATTC 131 501 199 Antisense
GCTAGCCAACTTCTTCGAGTGTACT 160 303 330 Antisense
AGATCGCTGCGTACATGGGTGTGGA 489 65 416 Antisense
ATGCACCGGGACACTTTTTCGATGA 442 39 446 Antisense
Sequence Source Affymetrix Proprietary Database