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[186128_at]

Description C33H5.11 /REP_DB=WormBase Gene ID /WP=CE26879 /TR=Q18408 /GB=AAA82268.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 64      6grp_total > 73      4grp_total > 21      6grp_highest_sub > 03_04      6grp_cgc > 75      6grp_high1_sub > 03_04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 663
1 2 3 4 range
A 772.1
(1.4)
P 		597.4
(-1)
P 		452.9
(-3)
P 		885.4
(3)
P 		433
B 822.8
(0.2)
P 		684.6
(-1.1)
P 		482.5
(-3)
P 		1115.8
(3)
P 		633
C 839.8
(0.6)
P 		559.5
(-3)
P 		560
(-3)
P 		1027
(3)
P 		468
avr 811.6
(0.7) 		613.8
(-1.6) 		498.5
(-3) 		1009.4
(3) 		511

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 564.1
(-3)
P 		688.4
(-0.6)
P 		730.9
(0.2)
P 		874.4
(3)
P 		663.4
(-1.1)
P 		743.6
(0.5)
P 		310
B 613.3
(-3)
P 		655.9
(-2.2)
P 		916.1
(3)
P 		700.9
(-1.3)
P 		766.8
(0)
P 		625.5
(-2.8)
P 		303
C 642.3
(-3)
P 		738.4
(-0.7)
P 		795.9
(0.6)
P 		897.1
(3)
P 		729.3
(-1)
P 		778.9
(0.2)
P 		255
avr 606.6
(-3) 		694.2
(-0.6) 		814.3
(2.7) 		824.1
(3) 		719.8
(0.1) 		716
(0) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 281.1
(3)
P 		129.7
(-2.6)
P 		118.4
(-3)
P 		129.6
(-2.6)
P 		163
B 262.4
(3)
P 		169.1
(-0.7)
P 		111.8
(-3)
P 		237.8
(2)
P 		151
C 278
(3)
P 		160.9
(-3)
P 		195.2
(-1.2)
P 		173.2
(-2.4)
P 		117
avr 273.8
(3) 		153.2
(-2.5) 		141.8
(-3) 		180.2
(-1.3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 104
(-3)
P 		244.8
(3)
P 		159.2
(-0.6)
P 		221.8
(2)
P 		200.2
(1.1)
P 		181.1
(0.3)
P 		141
B 213.4
(-1.7)
P 		218.3
(-1.4)
P 		222.4
(-1.2)
P 		185.6
(-3)
P 		311.6
(3)
P 		233.3
(-0.7)
P 		126
C 238.1
(1.3)
P 		225.3
(0.4)
P 		202.6
(-1.3)
P 		180.4
(-3)
P 		236
(1.1)
P 		260.8
(3)
P 		80
avr 185.2
(-3) 		229.5
(1.1) 		194.7
(-2.1) 		195.9
(-2) 		249.3
(3) 		225.1
(0.7) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186128_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8980
Sequence Type Exemplar sequence
Representative Public ID C33H5.11 NCBI
Target Description C33H5.11 /REP_DB=WormBase Gene ID /WP=CE26879 /TR=Q18408 /GB=AAA82268.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068885(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068885 NCBI Caenorhabditis elegans IntraMembrane Protease (IMPAS) family member (imp-3) (imp-3) mRNA, complete cds. 10/11 None
SNAP00000004480 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7786181:7789472:-1 10/11 None
GENEFINDER00000004508 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7786181:7789430:-1 10/11 None
C33H5.11.1 ENSEMBL cdna:known chromosome:CEL140:IV:7785996:7789445:-1 gene:C33H5.11 10/11 A 
C33H5.11.2 ENSEMBL cdna:known chromosome:CEL140:IV:7785996:7789450:-1 gene:C33H5.11 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7787725-7789436(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol imp-3
Ensembl C33H5.11
Entrez Gene 177565 Entrez gene
SwissProt Q18408 EMBL-EBI
WormBase CE29696 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8717 D-alanyl-D-alanine endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82268 Hypothetical protein C33H5.11 [Caenorhabditis elegans] ref|NP_501286.2| IntraMembrane Protease (IMPAS) family member (imp-3) [Caenorhabditis elegans] 0.0
blast CAE70884 Hypothetical protein CBG17674 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501286.2 7 5-23,43-65,298-320,340-362,382-404,458-480,487-506
C33H5.11.1 7 5-23,43-65,298-320,340-362,382-404,458-480,487-506
C33H5.11.2 7 5-23,43-65,298-320,340-362,382-404,458-480,487-506
SNAP00000004480 7 20-37,57-79,312-334,354-376,396-418,472-494,501-520
GENEFINDER00000004508 7 5-23,43-65,298-320,340-362,382-404,458-480,487-506
Sequence
Target Sequence 
>C. ELEGANS:186128_AT
ggattgtactttatcactcctgtcgaagggcatctacaatttactttttcgagctcgatt
caacaactgtaatattcatggatcaggttcctgcaatgattctcccattcgttttctcta
tagtcttgtattttgtatatttgggaactaaaagaagcgccaatatcgaacgagacagag
aaattgctagagaagctgaaaaagaactcaagacatcctcttcattcaactctcgaaagg
tttcccgtgagatcagcaggcgtgcttccgtttcattaggagatgaacaggcagagcaac
agcaaagaattcgaaaatcgtcatctgttacaccagaagttcgtagtcgtactaactcaa
aaagtactcatgatcttatgacaacacacagaggatcttcaagcaattggatatctgcaa
gtcaacgatcaagcagaaaatcttcaatgggtggatcaccagataaaagtcaaattgtat
ggactaccggagaagaaggtacgacggccgagaaatgtgacatttataaaaaactcggag
atattgacctattttcctattcactaagtgcgttgagcctacttccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTGTACTTTATCACTCCTGTCG 192 505 68 Antisense
GGGCATCTACAATTTACTTTTTCGA 158 493 95 Antisense
TTTCGAGCTCGATTCAACAACTGTA 480 661 114 Antisense
ATCAGGTTCCTGCAATGATTCTCCC 613 29 149 Antisense
CCCATTCGTTTTCTCTATAGTCTTG 355 259 171 Antisense
ATCCTCTTCATTCAACTCTCGAAAG 554 37 282 Antisense
GAAAGGTTTCCCGTGAGATCAGCAG 635 359 302 Antisense
GGCGTGCTTCCGTTTCATTAGGAGA 119 541 326 Antisense
CGAAAATCGTCATCTGTTACACCAG 398 253 379 Antisense
GACCTATTTTCCTATTCACTAAGTG 690 381 613 Antisense
ACTAAGTGCGTTGAGCCTACTTCCG 219 69 630 Antisense
Sequence Source Affymetrix Proprietary Database