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[186126_at]

Description C01B12.4 /REP_DB=WormBase Gene ID /WP=CE07792 /TR=O17204 /GB=AAB70977.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_high_8_8 > 18      6grp_highest_nonorm > 90      6grp_total > 28      4grp_total > 30      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 194.4
(3)
P 		98.7
(-1.9)
A 		78
(-3)
P 		185.7
(2.6)
P 		116
B 205.2
(3)
P 		155.8
(0.3)
P 		94.6
(-3)
A 		204.9
(3)
P 		111
C 201.5
(3)
P 		121
(-1.1)
P 		84.1
(-3)
P 		146
(0.2)
P 		117
avr 200.4
(3) 		125.2
(-0.9) 		85.6
(-3) 		178.9
(1.9) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 224.8
(3)
P 		183.5
(1)
P 		122.3
(-1.9)
P 		99.9
(-3)
P 		208
(2.2)
P 		141.9
(-1)
P 		125
B 188.3
(2)
P 		202.1
(3)
P 		174.9
(1.1)
P 		115
(-3)
P 		131.1
(-1.9)
P 		187.8
(2)
P 		87
C 168.4
(3)
P 		151.2
(-1.3)
P 		144.3
(-3)
P 		152.2
(-1)
P 		144.6
(-2.9)
P 		150.9
(-1.4)
P 		24
avr 193.8
(3) 		178.9
(1.7) 		147.2
(-0.9) 		122.4
(-3) 		161.2
(0.3) 		160.2
(0.2) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 70.8
(3)
P 		21.4
(-2.9)
A 		20.4
(-3)
P 		27.2
(-2.2)
P 		50
B 65.4
(3)
P 		38.5
(-0.7)
P 		21.9
(-3)
A 		43.7
(0)
P 		44
C 66.7
(3)
P 		34.8
(-1.5)
P 		29.3
(-2.3)
P 		24.6
(-3)
P 		42
avr 67.6
(3) 		31.6
(-1.9) 		23.9
(-3) 		31.8
(-1.9) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 41.4
(-0.6)
P 		65.3
(3)
P 		26.6
(-2.8)
P 		25.3
(-3)
P 		62.8
(2.6)
P 		34.5
(-1.6)
P 		40
B 65.5
(2.3)
P 		67.3
(2.6)
P 		42.5
(-1.2)
P 		30.5
(-3)
P 		53.3
(0.5)
P 		70
(3)
P 		40
C 62.4
(3)
P 		46.1
(-0.1)
P 		36.7
(-1.8)
P 		30.6
(-3)
P 		46.8
(0.1)
P 		50.5
(0.8)
P 		32
avr 56.4
(2.4) 		59.6
(3) 		35.3
(-1.7) 		28.8
(-3) 		54.3
(2) 		51.7
(1.5) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186126_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5758
Sequence Type Exemplar sequence
Representative Public ID C01B12.4 NCBI
Target Description C01B12.4 /REP_DB=WormBase Gene ID /WP=CE07792 /TR=O17204 /GB=AAB70977.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061229(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061229 NCBI Caenorhabditis elegans C01B12.4 (C01B12.4) mRNA, complete cds. 11/11 None
SNAP00000043173 ENSEMBL cdna:SNAP chromosome:CEL140:II:8294:9233:1 10/11 None
GENEFINDER00000043185 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6664:9233:1 11/11 None
C01B12.4 ENSEMBL cdna:known chromosome:CEL140:II:6664:9233:1 gene:C01B12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6663-9233(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01B12.4
Entrez Gene 182062 Entrez gene
SwissProt O17204 EMBL-EBI
WormBase CE34642 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70977 Hypothetical protein C01B12.4 [Caenorhabditis elegans] ref|NP_493630.2| C01B12.4 [Caenorhabditis elegans] 0.0
blast CAE62859 Hypothetical protein CBG07042 [Caenorhabditis briggsae] 0.0
blast AAB70977 Hypothetical protein C01B12.4 [Caenorhabditis elegans] ref|NP_493630.2| C01B12.4 [Caenorhabditis elegans] 1.0E-103
blast CAE62859 Hypothetical protein CBG07042 [Caenorhabditis briggsae] 2.0E-77
blast CAE60601 Hypothetical protein CBG04238 [Caenorhabditis briggsae] 2.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493630.2 5 37-59,72-91,96-118,196-218,275-297
C01B12.4 5 37-59,72-91,96-118,196-218,275-297
GENEFINDER00000043185 5 37-59,72-91,96-118,196-218,275-297
Sequence
Target Sequence 
>C. ELEGANS:186126_AT
aactcatggcactactctcgatgtgcattgccttttatggttgctacgttatggttcctc
ttggaagagaaaagcatgctccataccgattcgattttctatttcgtacatgtgacattg
ctcagtgtatttacacaattcaaaagtttgtctttgagtttgctgctgcagttggcttga
tcacttcggatcgataccttccagctgctgcgaaggcattgtgtaagttcagaagtttaa
atggagataggaatgtttcgattttcgtttataaaaacacctggtgggcatcgtttatgt
gcacctgggagatgatgctcctctctgctctttgctcatattgtttgcgtccagccaagt
gtaaattttttgatctttaccctggaaacgatatgccagctttatcggcaagagatggtt
caaactcccgtgttccgtcattttctcgacgtctatctattgaatatgagccacgaattg
ctggagtgatgttggagccgccgtcaagaagttcactgagcattactcctagggataaaa
tagaagacccaacaaccgtatcgtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCATGGCACTACTCTCGATGTG 469 139 740 Antisense
ATGGTTGCTACGTTATGGTTCCTCT 193 51 776 Antisense
GTTTGTCTTTGAGTTTGCTGCTGCA 451 451 885 Antisense
TTGCTGCTGCAGTTGGCTTGATCAC 153 703 899 Antisense
GATACCTTCCAGCTGCTGCGAAGGC 150 425 932 Antisense
TGGGCATCGTTTATGTGCACCTGGG 93 555 1024 Antisense
CTTTGCTCATATTGTTTGCGTCCAG 517 223 1069 Antisense
AGAGATGGTTCAAACTCCCGTGTTC 23 69 1150 Antisense
TGTTCCGTCATTTTCTCGACGTCTA 209 563 1170 Antisense
GCCGCCGTCAAGAAGTTCACTGAGC 609 285 1236 Antisense
GAAGACCCAACAACCGTATCGTATT 319 339 1282 Antisense
Sequence Source Affymetrix Proprietary Database