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[186125_at] 7TM chemoreceptor, sru family

Description F31F4.13 /REP_DB=WormBase Gene ID /WP=CE09833 /TR=O17132 /GB=AAG24091.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 11      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 53.2
(-2.6)
A 		48.4
(-3)
A 		70
(-1.1)
A 		114.9
(3)
A 		67
B 34.5
(-1)
A 		13.9
(-3)
A 		30.3
(-1.4)
A 		76.3
(3)
P 		62
C 51.7
(0)
A 		81.4
(3)
A 		21.5
(-3)
A 		38.9
(-1.3)
A 		60
avr 46.5
(-2) 		47.9
(-1.8) 		40.6
(-3) 		76.7
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 58.8
(3)
A 		26.3
(-0.8)
A 		15.9
(-2)
A 		6.8
(-3)
A 		41.8
(1)
A 		42.3
(1.1)
A 		52
B 33
(0.9)
A 		37.3
(1.8)
A 		27.4
(-0.2)
A 		43.6
(3)
A 		40.7
(2.4)
A 		13.2
(-3)
A 		30
C 28.7
(-1.3)
A 		21
(-2)
A 		22.9
(-1.8)
A 		80.6
(3)
A 		8.8
(-3)
A 		20.3
(-2)
A 		72
avr 40.2
(2) 		28.2
(-1.3) 		22.1
(-3) 		43.7
(3) 		30.4
(-0.7) 		25.3
(-2.1) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 19.4
(3)
A 		10.5
(-3)
A 		18.3
(2.3)
A 		16.8
(1.2)
A 		9
B 11
(0.5)
A 		3.4
(-3)
A 		7
(-1.3)
A 		16.3
(3)
P 		13
C 17.1
(0.8)
A 		23.4
(3)
A 		7.5
(-2.7)
A 		6.6
(-3)
A 		17
avr 15.8
(3) 		12.4
(-1.2) 		10.9
(-3) 		13.2
(-0.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 10.8
(2)
A 		9.3
(1.2)
A 		3.5
(-2)
A 		1.7
(-3)
A 		12.6
(3)
A 		10.3
(1.7)
A 		11
B 11.5
(0.4)
A 		12.4
(0.9)
A 		6.7
(-2.1)
A 		11.5
(0.4)
A 		16.5
(3)
A 		4.9
(-3)
A 		12
C 10.6
(0.5)
A 		6.4
(-1.4)
A 		5.8
(-1.7)
A 		16.2
(3)
A 		2.9
(-3)
A 		6.8
(-1.2)
A 		13
avr 11
(3) 		9.4
(1.3) 		5.3
(-3) 		9.8
(1.7) 		10.7
(2.7) 		7.3
(-0.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186125_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15307
Sequence Type Exemplar sequence
Representative Public ID F31F4.13 NCBI
Target Description F31F4.13 /REP_DB=WormBase Gene ID /WP=CE09833 /TR=O17132 /GB=AAG24091.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070886(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070886 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-24) (sru-24) mRNA, complete cds. 11/11 None
F31F4.13 ENSEMBL cdna:known chromosome:CEL140:V:667726:671272:-1 gene:F31F4.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012380 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:667725-669209(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sru family
Gene Symbol sru-24
Ensembl F31F4.13
Entrez Gene 185171 Entrez gene
SwissProt O17132 EMBL-EBI
WormBase CE33284 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503287 Serpentine Receptor, class U family member (sru-24) [Caenorhabditis elegans] gb|AAG24091.2| Serpentine receptor, class u protein 24 [Caenorhabditis elegans] 1.0E-163
blast NP_503289 Serpentine Receptor, class U family member (sru-25) [Caenorhabditis elegans] gb|AAG24092.2| Serpentine receptor, class u protein 25 [Caenorhabditis elegans] 1.0E-98
blast CAB05675 Hypothetical protein C08F11.4 [Caenorhabditis elegans] ref|NP_502630.2| Serpentine Receptor, class U family member (sru-21) [Caenorhabditis elegans] 3.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.9E-64
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503287.2 6 24-46,66-88,108-130,151-173,203-225,261-283
F31F4.13 6 24-46,66-88,108-130,151-173,203-225,261-283
Sequence
Target Sequence 
>C. ELEGANS:186125_AT
caattatgcaactatggccttcccgtttttggtggctctcctcaggttgaatttgataat
tttcccgtcgactcatgcaaaggtcaataaaggaatactgaaaatcgcaattccattaat
tttcacttacccctttatcttcactttcttcttatttcccggctccgggttctgcacgaa
aatcgaatttctaccgtttggatctattattcttcgtgtcacagatactttattcgggat
caacaacacaatcccgctgattttcaccacttttttctggttttcagcctgtttgataac
taattttgtgctgattttcaaactgattagacatagattcacagttgatttgagcatgag
atctcagaaatcacataaagcagagatatcgctaactctgacaacggtatccatgacgtt
ctcatttttgaccaatggaatgattgcaatttctggaattttcttcccaagcgtcgctgt
gtaccttattgtgatccggccctttacaaatgatttagacacgtgtatcgttccttgggt
tttctacttgactcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTATGCAACTATGGCCTTCCCG 706 179 228 Antisense
GTGGCTCTCCTCAGGTTGAATTTGA 83 491 259 Antisense
TTTCCCGTCGACTCATGCAAAGGTC 169 671 288 Antisense
GGATCTATTATTCTTCGTGTCACAG 37 513 427 Antisense
AACAACACAATCCCGCTGATTTTCA 440 135 469 Antisense
ATCGCTAACTCTGACAACGGTATCC 368 37 615 Antisense
TTTCTTCCCAAGCGTCGCTGTGTAC 117 671 687 Antisense
TGTGTACCTTATTGTGATCCGGCCC 327 555 705 Antisense
GATCCGGCCCTTTACAAATGATTTA 26 417 720 Antisense
AGACACGTGTATCGTTCCTTGGGTT 542 71 744 Antisense
TCCTTGGGTTTTCTACTTGACTCAT 50 589 759 Antisense
Sequence Source Affymetrix Proprietary Database