[Home] | [Total List]

[186124_at]

Description T02B11.4 /REP_DB=WormBase Gene ID /WP=CE13038 /TR=O16973 /GB=AAB69902.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 01      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 12      6grp_total > 08      4grp_total > 04      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3427
1 2 3 4 range
A 1231.4
(-2)
P 		745.1
(-2.9)
P 		682.3
(-3)
P 		4015.6
(3)
P 		3333
B 1078.9
(-2.4)
P 		755.4
(-3)
P 		810.4
(-2.9)
P 		4108.8
(3)
P 		3353
C 1574.7
(-1.3)
P 		710.2
(-3)
P 		744.3
(-2.9)
P 		3702.7
(3)
P 		2993
avr 1295
(-2) 		736.9
(-3) 		745.7
(-3) 		3942.4
(3) 		3206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2325
1 2 3 4 5 6 range
A 2015.5
(0.4)
P 		2531.3
(2.7)
P 		2552.7
(2.8)
P 		2594.1
(3)
P 		1310.3
(-2.7)
P 		1240.5
(-3)
P 		1354
B 3515.8
(3)
P 		1756.2
(-1.5)
P 		2333.1
(-0.1)
P 		1907.9
(-1.1)
P 		1190.4
(-3)
P 		1401.2
(-2.5)
P 		2325
C 3084.3
(3)
P 		1512.1
(-2.1)
P 		2587.6
(1.4)
P 		1646.9
(-1.6)
P 		1216.9
(-3)
P 		1580.7
(-1.8)
P 		1867
avr 2871.9
(3) 		1933.2
(-0.4) 		2491.1
(1.6) 		2049.6
(-0) 		1239.2
(-3) 		1407.5
(-2.4) 		1633
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 714
1 2 3 4 range
A 448.4
(1)
P 		161.7
(-3)
P 		178.4
(-2.8)
P 		587.8
(3)
P 		426
B 344.1
(-1.6)
P 		186.6
(-3)
P 		187.8
(-3)
P 		875.6
(3)
P 		689
C 521.3
(1.5)
P 		204.2
(-3)
P 		259.4
(-2.2)
P 		624.3
(3)
P 		420
avr 437.9
(-0) 		184.2
(-3) 		208.5
(-2.7) 		695.9
(3) 		512

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 921
1 2 3 4 5 6 range
A 371.5
(-2.3)
P 		900.2
(3)
P 		555.9
(-0.5)
P 		657.9
(0.6)
P 		395.4
(-2.1)
P 		302
(-3)
P 		598
B 1223.3
(3)
P 		584.6
(-2.2)
P 		566.5
(-2.3)
P 		505.3
(-2.8)
P 		483.6
(-3)
P 		522.5
(-2.7)
P 		740
C 1143.2
(3)
P 		461.4
(-2)
P 		658.6
(-0.6)
P 		331.2
(-3)
P 		393.8
(-2.5)
P 		529.1
(-1.5)
P 		812
avr 912.7
(3) 		648.7
(-0.2) 		593.7
(-0.9) 		498.1
(-2.1) 		424.3
(-3) 		451.2
(-2.7) 		488
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186124_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15677
Sequence Type Exemplar sequence
Representative Public ID T02B11.4 NCBI
Target Description T02B11.4 /REP_DB=WormBase Gene ID /WP=CE13038 /TR=O16973 /GB=AAB69902.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070946
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000007466 ENSEMBL cdna:SNAP chromosome:CEL140:V:869387:870956:-1 None
GENEFINDER00000007488 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:869387:870956:-1 None
T02B11.4.1 ENSEMBL cdna:known chromosome:CEL140:V:869334:870961:-1 gene:T02B11.4 None
T02B11.4.2 ENSEMBL cdna:known chromosome:CEL140:V:869334:870959:-1 gene:T02B11.4 None
NM_070946 NCBI Caenorhabditis elegans T02B11.4 (T02B11.4) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:869036-870956(-) 82.8 100.0
Public Domain and Genome References
Gene Title
Ensembl T02B11.4
Entrez Gene 187981 Entrez gene
SwissProt O16973 EMBL-EBI
WormBase CE33302 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69902 Hypothetical protein T02B11.4 [Caenorhabditis elegans] ref|NP_503347.2| T02B11.4 [Caenorhabditis elegans] 1.0E-110
blast CAE62312 Hypothetical protein CBG06377 [Caenorhabditis briggsae] 1.0E-87
Sequence
Target Sequence 
>C. ELEGANS:186124_AT
gaactggagccgattcttgcatgtatcgagccaacgctttatgccacacctgaagacacc
gacgctattattgcaaagggaaagtcgtgtgtgatcagcaacagtatgagcaaggctatt
ccagcaatgaatctgtacagcgggttcaacagctgcaccgacctaatggccctaatcgac
aaattgatgaagccattcatgaatcaatgcaagcaagtgatcaacaaatgcctcaaggtc
ctgaacaactgcaaggctaacaacaaacaaactggagtcaagaaacagaacgcctgtatg
aacaaagtatggggacagggtattgctatggttaccaaacaattcgtcaataaggtgtgc
acggctctttccaaaaagatgactgcaaaggaatggaattgctgcaagacgggtgtgcgg
caagtttgccgaattcgccgtttgttaaatttgccgagttcgcaaaatttcgaaatttgc
agcacacatcaaaaatttgtcaatagaattttgaccaaaactattgattttgtccctaaa
attgagtttctgtatccgattcatttttacaggcatatgactgcacttttttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTGGAGCCGATTCTTGCATGTA 369 349 142 Antisense
GTATCGAGCCAACGCTTTATGCCAC 191 455 164 Antisense
CTTTATGCCACACCTGAAGACACCG 139 221 178 Antisense
GAAGACACCGACGCTATTATTGCAA 449 339 193 Antisense
CCGACCTAATGGCCCTAATCGACAA 94 263 299 Antisense
ATGCCTCAAGGTCCTGAACAACTGC 372 41 369 Antisense
AATAAGGTGTGCACGGCTCTTTCCA 659 169 490 Antisense
ATTGCTGCAAGACGGGTGTGCGGCA 448 5 539 Antisense
TGCCGAATTCGCCGTTTGTTAAATT 166 585 568 Antisense
GAGTTTCTGTATCCGATTCATTTTT 391 399 685 Antisense
CAGGCATATGACTGCACTTTTTTGC 66 209 711 Antisense
Sequence Source Affymetrix Proprietary Database