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[186122_at]

Description R06B10.2 /REP_DB=WormBase Gene ID /WP=CE17201 /TR=O44874 /GB=AAK21449.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 34.2
(3)
P 		23.4
(-1.2)
A 		18.9
(-3)
A 		21.4
(-2)
A 		15
B 22.9
(-0.5)
A 		5.9
(-3)
A 		34.5
(1.2)
A 		46.3
(3)
A 		40
C 21.4
(-3)
A 		44
(0.7)
P 		25.6
(-2.3)
A 		58.5
(3)
A 		37
avr 26.2
(-2.4) 		24.4
(-3) 		26.3
(-2.4) 		42.1
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 31.1
(0.1)
A 		39
(1.1)
A 		54.7
(3)
M 		5.8
(-3)
A 		30.8
(0.1)
A 		36.1
(0.7)
A 		49
B 34.6
(2.5)
A 		36.4
(3)
A 		16.3
(-3)
A 		17.6
(-2.6)
A 		28.7
(0.7)
P 		30
(1.1)
A 		20
C 10.1
(-3)
A 		41.8
(3)
M 		17.4
(-1.6)
A 		31.8
(1.1)
A 		30.4
(0.8)
A 		36.7
(2)
P 		32
avr 25.3
(-1) 		39.1
(3) 		29.5
(0.2) 		18.4
(-3) 		30
(0.4) 		34.3
(1.6) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.5
(3)
P 		5.1
(-1.7)
A 		4.9
(-1.9)
A 		3.1
(-3)
A 		9
B 7.3
(1.1)
A 		1.5
(-3)
A 		8
(1.6)
A 		9.9
(3)
A 		8
C 7.1
(-3)
A 		12.6
(3)
P 		8.9
(-1)
A 		9.9
(0.1)
A 		6
avr 9
(3) 		6.4
(-3) 		7.3
(-0.9) 		7.6
(-0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.7
(-1)
A 		13.9
(3)
A 		11.9
(2)
M 		1.5
(-3)
A 		9.3
(0.8)
A 		8.8
(0.5)
A 		12
B 12
(2.9)
A 		12.1
(3)
A 		4
(-3)
A 		4.7
(-2.5)
A 		11.7
(2.7)
P 		11.2
(2.3)
A 		8
C 3.7
(-3)
A 		12.8
(3)
M 		4.4
(-2.5)
A 		6.4
(-1.2)
A 		9.8
(1)
A 		12.3
(2.7)
P 		9
avr 7.1
(-1) 		12.9
(3) 		6.8
(-1.2) 		4.2
(-3) 		10.3
(1.2) 		10.8
(1.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186122_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8135
Sequence Type Exemplar sequence
Representative Public ID R06B10.2 NCBI
Target Description R06B10.2 /REP_DB=WormBase Gene ID /WP=CE17201 /TR=O44874 /GB=AAK21449.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064908(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064908 NCBI Caenorhabditis elegans R06B10.2 (R06B10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000022075 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:966641:974487:-1 11/11 None
SNAP00000022058 ENSEMBL cdna:SNAP chromosome:CEL140:III:973720:975895:-1 10/11 None
R06B10.2 ENSEMBL cdna:known chromosome:CEL140:III:973298:978524:-1 gene:R06B10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022057 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:973297-978524(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R06B10.2
Entrez Gene 187638 Entrez gene
SwissProt O44874 EMBL-EBI
WormBase CE17201 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21449 Hypothetical protein R06B10.2 [Caenorhabditis elegans] ref|NP_497309.1| R06B10.2 [Caenorhabditis elegans] 0.0
blast AAK29873 Hypothetical protein Y22D7AR.2 [Caenorhabditis elegans] ref|NP_497449.1| Y22D7AR.2 [Caenorhabditis elegans] 0.0
blast AAK21448 Hypothetical protein R06B10.1 [Caenorhabditis elegans] ref|NP_497308.1| R06B10.1 [Caenorhabditis elegans] 0.0
blast AAK29876 Hypothetical protein Y22D7AR.12 [Caenorhabditis elegans] ref|NP_497451.1| Y22D7AR.12 [Caenorhabditis elegans] 1.0E-163
blast AAB54272 Hypothetical protein R155.2 [Caenorhabditis elegans] ref|NP_497484.1| R155.2 [Caenorhabditis elegans] 1.0E-128
blast AAB54270 Hypothetical protein R155.4 [Caenorhabditis elegans] ref|NP_497486.2| R155.4 [Caenorhabditis elegans] 1.0E-107
blast AAK21449 Hypothetical protein R06B10.2 [Caenorhabditis elegans] ref|NP_497309.1| R06B10.2 [Caenorhabditis elegans] 7.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.0E-23
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.0E-19
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.8E-29
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.4E-34
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 8.5E-54
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.5E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000022075 4 293-312,1082-1104,1478-1500,1524-1543
Sequence
Target Sequence 
>C. ELEGANS:186122_AT
attacacaccaccaggtcctggattggaatggtttgaacgctctcgaagatcacaggggt
gctggtttggcggctatgttccttatgaaatacgaaacgacagcgatcgtccactgcgtt
gatggtgtctctcgttcagctgttttggcaggaatgatcattggcttccaaaaaatcatc
gagacgcgtggagatatgaacgtggctgatctgattgatgatcttcggaaacaacgtgca
atggcaattacctcgggtttggaacttgcgtttgttgatgctggaatctttctgcttttt
aaacgaatgatgaacaacttcgaagaagaatatccagaagacctcaaacagatgctcaaa
gatgctgttcagtattacaaattaattgcgggctaccaagtccagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTACACACCACCAGGTCCTGGATT 236 11 2260 Antisense
GAACGCTCTCGAAGATCACAGGGGT 394 347 2295 Antisense
ATCACAGGGGTGCTGGTTTGGCGGC 330 25 2309 Antisense
GTTTGGCGGCTATGTTCCTTATGAA 602 451 2324 Antisense
ACGAAACGACAGCGATCGTCCACTG 234 89 2351 Antisense
GATCGTCCACTGCGTTGATGGTGTC 431 417 2364 Antisense
TCTCTCGTTCAGCTGTTTTGGCAGG 67 609 2387 Antisense
ATGAACGTGGCTGATCTGATTGATG 494 43 2455 Antisense
ACGTGCAATGGCAATTACCTCGGGT 53 95 2493 Antisense
GATGCTGGAATCTTTCTGCTTTTTA 130 415 2536 Antisense
TAATTGCGGGCTACCAAGTCCAGCA 608 633 2642 Antisense
Sequence Source Affymetrix Proprietary Database