[Home] | [Total List]

[186121_at]

Description Y47D3A.12 /REP_DB=WormBase Gene ID /WP=CE24328 /TR=Q9U2C9 /GB=CAB57892.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 17      6grp_cgc > 46      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 5.8
(-2.5)
A 		3.2
(-3)
A 		3.9
(-2.9)
A 		36.6
(3)
A 		33
B 2.3
(-3)
A 		8
(-0.2)
A 		13.4
(2.5)
A 		14.4
(3)
A 		12
C 5.1
(-1.4)
A 		14.3
(3)
A 		1.8
(-3)
A 		8.2
(0.1)
A 		13
avr 4.4
(-3) 		8.5
(-1.4) 		6.4
(-2.2) 		19.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3.2
(-0.3)
A 		3.3
(-0.2)
A 		5.3
(3)
A 		3.1
(-0.5)
A 		1.5
(-3)
A 		3.9
(0.8)
A 		4
B 14.4
(3)
A 		0.9
(-3)
A 		13.6
(2.6)
A 		2.8
(-2.2)
A 		4
(-1.6)
A 		3.8
(-1.7)
A 		14
C 2.3
(-2.6)
A 		1.2
(-3)
A 		2.4
(-2.6)
A 		7.6
(-0.7)
A 		1.6
(-2.9)
A 		18
(3)
A 		17
avr 6.6
(1.2) 		1.8
(-3) 		7.1
(1.7) 		4.5
(-0.6) 		2.4
(-2.5) 		8.6
(3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.1
(-1.2)
A 		0.7
(-3)
A 		1
(-2.6)
A 		5.4
(3)
A 		5
B 0.7
(-3)
A 		2
(0.3)
A 		3.1
(3)
A 		3.1
(3)
A 		2
C 1.7
(-1.1)
A 		4.1
(3)
A 		0.6
(-3)
A 		1.4
(-1.6)
A 		4
avr 1.5
(-3) 		2.3
(-0.3) 		1.6
(-2.7) 		3.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.6
(-2.1)
A 		1.2
(3)
A 		1.2
(3)
A 		0.8
(-0.4)
A 		0.5
(-3)
A 		1
(1.3)
A 		1
B 5
(3)
A 		0.3
(-3)
A 		3.3
(0.8)
A 		0.7
(-2.5)
A 		1.6
(-1.3)
A 		1.4
(-1.6)
A 		5
C 0.9
(-2.5)
A 		0.4
(-3)
A 		0.6
(-2.8)
A 		1.5
(-1.8)
A 		0.5
(-2.9)
A 		6
(3)
A 		6
avr 2.2
(1.4) 		0.6
(-3) 		1.7
(0) 		1
(-1.9) 		0.9
(-2.2) 		2.8
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186121_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6562
Sequence Type Exemplar sequence
Representative Public ID Y47D3A.12 NCBI
Target Description Y47D3A.12 /REP_DB=WormBase Gene ID /WP=CE24328 /TR=Q9U2C9 /GB=CAB57892.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067043(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067043 NCBI Caenorhabditis elegans T BoX family member (tbx-37) (tbx-37) mRNA, complete cds. 11/11 None
SNAP00000007210 ENSEMBL cdna:SNAP chromosome:CEL140:III:11218774:11226995:-1 11/11 None
GENEFINDER00000007276 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11223419:11227238:-1 11/11 None
Y47D3A.12 ENSEMBL cdna:known chromosome:CEL140:III:11224761:11227238:-1 gene:Y47D3A.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11224756-11227234(-) 99.91 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tbx-37
Ensembl Y47D3A.12
Entrez Gene 189977 Entrez gene
SwissProt Q9U2C9 EMBL-EBI
WormBase CE24328 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB57892 Hypothetical protein Y47D3A.12 [Caenorhabditis elegans] ref|NP_499444.1| T BoX family member (tbx-37) [Caenorhabditis elegans] sp|Q9U2C9|TBX37_CAEEL Putative T-box protein 1.0E-178
blast CAB57892 Hypothetical protein Y47D3A.12 [Caenorhabditis elegans] ref|NP_499444.1| T BoX family member (tbx-37) [Caenorhabditis elegans] sp|Q9U2C9|TBX37_CAEEL Putative T-box protein 1.0E-177
blast CAB57892 Hypothetical protein Y47D3A.12 [Caenorhabditis elegans] ref|NP_499444.1| T BoX family member (tbx-37) [Caenorhabditis elegans] sp|Q9U2C9|TBX37_CAEEL Putative T-box protein 1.0E-152
blast CAB03909 Hypothetical protein C24H11.3 [Caenorhabditis elegans] ref|NP_499526.1| C24H11.3 [Caenorhabditis elegans] sp|Q9XVD5|TBX38_CAEEL Putative T-box protein 1.0E-106
blast CAE67636 Hypothetical protein CBG13193 [Caenorhabditis briggsae] 3.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 2.1E-60
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 2.1E-60
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000007210 1 328-347
GENEFINDER00000007276 1 367-386
Sequence
Target Sequence 
>C. ELEGANS:186121_AT
cacctcaaaatcactaatgacccggaaaacaaggatcagaagctgattttagctcaaagt
ctgcacaaatacattccagttttgcatatcaaacagctggatccttataaaggaacattt
caaatggattttcatggagttgaatttcgcttggaggctacgcaatttatcgttgttact
gcttatcagaacgaagaactcacaaaactcaaggtccatcacaataaattcgcctccgga
ttccgttcaaatggcaagagacggctttcttcagagtctgaaaattcggaaaactccccg
ccaaagcgcagcgcctcggcaatttcttcattaaccccaccagcaatctccccgccaatg
gattatacccagcaaaacccatattttttcaaccaaaactttttctcgactccgcagagc
caccagccacagtttgctgctcatagtgccaatgctcaaaattacaataattttggagct
caaaatggggctcaatttgattggaatgtgtattatcagagacaatggtactggcagcag
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCTCAAAATCACTAATGACCCGG 328 199 466 Antisense
GCTGATTTTAGCTCAAAGTCTGCAC 505 295 507 Antisense
AATACATTCCAGTTTTGCATATCAA 675 171 533 Antisense
GCATATCAAACAGCTGGATCCTTAT 605 305 549 Antisense
GAATTTCGCTTGGAGGCTACGCAAT 267 325 607 Antisense
TTTATCGTTGTTACTGCTTATCAGA 60 675 631 Antisense
GGTCCATCACAATAAATTCGCCTCC 424 501 678 Antisense
CGCCTCCGGATTCCGTTCAAATGGC 451 257 696 Antisense
TCCCCGCCAATGGATTATACCCAGC 528 595 814 Antisense
GATTATACCCAGCAAAACCCATATT 503 429 826 Antisense
AGAGACAATGGTACTGGCAGCAGCA 209 69 983 Antisense
Sequence Source Affymetrix Proprietary Database