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[186120_at]

Description W01A11.6 /REP_DB=WormBase Gene ID /WP=CE26017 /TR=Q23069 /GB=AAB04971.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 08      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 10      6grp_total > 09      4grp_total > 04      6grp_cgc > 0      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7872
1 2 3 4 range
A 2464.7
(-1.8)
P 		841.2
(-3)
P 		1332.2
(-2.6)
P 		8712.7
(3)
P 		7872
B 2447.4
(-1.8)
P 		1204.7
(-2.8)
P 		957
(-3)
P 		8413
(3)
P 		7456
C 2510.8
(-1.7)
P 		1054.4
(-3)
P 		1025.9
(-3)
P 		8133
(3)
P 		7107
avr 2474.3
(-1.8) 		1033.4
(-3) 		1105
(-2.9) 		8419.6
(3) 		7386

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 854
1 2 3 4 5 6 range
A 1765.8
(3)
P 		1273
(-1)
P 		1194.7
(-1.6)
P 		1478.7
(0.7)
P 		1199.4
(-1.6)
P 		1021.6
(-3)
P 		744
B 1775.4
(3)
P 		1164.6
(-1.3)
P 		1093.2
(-1.8)
P 		1264.1
(-0.6)
P 		1381.6
(0.2)
P 		921.2
(-3)
P 		854
C 1693
(3)
P 		1276.3
(-1)
P 		1148.2
(-2.3)
P 		1544.3
(1.6)
P 		1234.4
(-1.4)
P 		1072.3
(-3)
P 		621
avr 1744.7
(3) 		1238
(-1.1) 		1145.4
(-1.9) 		1429
(0.4) 		1271.8
(-0.8) 		1005
(-3) 		740
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1610
1 2 3 4 range
A 897.4
(0.9)
P 		182.6
(-3)
P 		348.3
(-2.1)
P 		1275.4
(3)
P 		1093
B 780.5
(-0.9)
P 		297.5
(-2.7)
P 		221.8
(-3)
P 		1792.8
(3)
P 		1571
C 831.1
(-0)
P 		303.1
(-3)
P 		357.6
(-2.7)
P 		1371.4
(3)
P 		1068
avr 836.3
(-0.2) 		261.1
(-3) 		309.2
(-2.8) 		1479.9
(3) 		1219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 379
1 2 3 4 5 6 range
A 325.5
(-0.7)
P 		452.7
(3)
P 		260.2
(-2.7)
P 		375
(0.7)
P 		361.9
(0.3)
P 		248.7
(-3)
P 		204
B 617.7
(3)
P 		387.6
(-0.9)
P 		265.5
(-3)
P 		334.8
(-1.8)
P 		561.3
(2)
P 		343.5
(-1.7)
P 		352
C 627.5
(3)
P 		389.4
(-1.3)
P 		292.2
(-3)
P 		310.6
(-2.7)
P 		399.4
(-1.1)
P 		358.9
(-1.8)
P 		335
avr 523.6
(3) 		409.9
(0.3) 		272.6
(-3) 		340.1
(-1.4) 		440.9
(1) 		317
(-1.9) 		251
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186120_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12006
Sequence Type Exemplar sequence
Representative Public ID W01A11.6 NCBI
Target Description W01A11.6 /REP_DB=WormBase Gene ID /WP=CE26017 /TR=Q23069 /GB=AAB04971.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072250(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072250 NCBI Caenorhabditis elegans MOlybdenum Cofactor biosynthesis family member (moc-2) (moc-2) mRNA, complete cds. 10/11 None
SNAP00000000916 ENSEMBL cdna:SNAP chromosome:CEL140:V:6505035:6505900:-1 9/11 None
GENEFINDER00000000919 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6505035:6507970:-1 10/11 None
W01A11.6 ENSEMBL cdna:known chromosome:CEL140:V:6504962:6506775:-1 gene:W01A11.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6505034-6506725(-) 96.38 100.0
Public Domain and Genome References
Gene Title
Gene Symbol moc-2
Ensembl W01A11.6
Entrez Gene 189078 Entrez gene
SwissProt Q23069 EMBL-EBI
WormBase CE29358 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6777 Mo-molybdopterin cofactor biosynthesis inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB04972 Hypothetical protein W01A11.7 [Caenorhabditis elegans] ref|NP_504652.2| W01A11.7 [Caenorhabditis elegans] 9.0E-97
blast AAB04971 Molybdenum cofactor biosynthesis protein 2 [Caenorhabditis elegans] ref|NP_504651.1| MOlybdenum Cofactor biosynthesis family member (moc-2) [Caenorhabditis elegans] 3.0E-90
blast AAB04971 Molybdenum cofactor biosynthesis protein 2 [Caenorhabditis elegans] ref|NP_504651.1| MOlybdenum Cofactor biosynthesis family member (moc-2) [Caenorhabditis elegans] 5.0E-86
blast CAE71894 Hypothetical protein CBG18952 [Caenorhabditis briggsae] 2.0E-77
blast T33961 hypothetical protein F46E10.5 - Caenorhabditis elegans 8.0E-71
blast AAB04971 Molybdenum cofactor biosynthesis protein 2 [Caenorhabditis elegans] ref|NP_504651.1| MOlybdenum Cofactor biosynthesis family member (moc-2) [Caenorhabditis elegans] 1.0E-70
blast T33961 hypothetical protein F46E10.5 - Caenorhabditis elegans 3.0E-51
blast CAE71893 Hypothetical protein CBG18951 [Caenorhabditis briggsae] 3.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR001453 EMBL-EBI Molybdenum cofactor biosynthesis protein 1.5E-44
Pfam IPR001453 EMBL-EBI Molybdenum cofactor biosynthesis protein 1.2E-35
Pfam IPR001453 EMBL-EBI Molybdenum cofactor biosynthesis protein 2.6E-39
Sequence
Target Sequence 
>C. ELEGANS:186120_AT
tggtcgacacgtcagcagtggtcaatgcaacagtcaatgagggaagccccttcgtcgttc
cagatgatgttactgctatccatgatgctcttgttgagcagagcaagtttgctgatgtga
tccttaccactggtggaaccggattcgctccgagagatgtgactccagaagtacagtatc
acgccactctgaaggtcattgatcgtcgttgttccggactcgaaatcgctttgcacactg
cttcactcaagatcacttcaatggcagcactttcgagagctattgttggtattcgtggag
gcacgctgattgtcaacatgccaggaagcgtgaaagcagttaaaattttttcaaagtcaa
ttatatttattattaatttttctaaagcaaaattgtttcaggaatgctgggataccctgg
agccacttctcaatcatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTCGACACGTCAGCAGTGGTCAA 423 551 155 Antisense
CCCTTCGTCGTTCCAGATGATGTTA 379 259 202 Antisense
GTTACTGCTATCCATGATGCTCTTG 38 447 223 Antisense
CACTGGTGGAACCGGATTCGCTCCG 380 199 282 Antisense
TACAGTATCACGCCACTCTGAAGGT 90 645 326 Antisense
GTCATTGATCGTCGTTGTTCCGGAC 412 467 349 Antisense
GGACTCGAAATCGCTTTGCACACTG 664 523 370 Antisense
TGCACACTGCTTCACTCAAGATCAC 383 577 386 Antisense
AGATCACTTCAATGGCAGCACTTTC 247 67 404 Antisense
GAATGCTGGGATACCCTGGAGCCAC 398 331 556 Antisense
CCTGGAGCCACTTCTCAATCATGGA 595 265 570 Antisense
Sequence Source Affymetrix Proprietary Database