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[186119_s_at]

Description R12C12.8 /REP_DB=WormBase Gene ID /WP=CE23928 /TR=Q21964 /GB=AAK71392.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 214.9
(3)
P 		18.6
(-3)
A 		59.7
(-1.7)
A 		133
(0.5)
A 		196
B 150.6
(3)
P 		107.1
(-0.8)
A 		81
(-3)
A 		138.4
(1.9)
P 		70
C 137.2
(1.2)
P 		93
(-2)
A 		78.6
(-3)
A 		163
(3)
P 		84
avr 167.6
(3) 		72.9
(-3) 		73.1
(-3) 		144.8
(1.6) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 95.9
(-0.9)
A 		118.7
(1.7)
A 		111.4
(0.9)
P 		130.2
(3)
A 		77.1
(-3)
A 		123
(2.2)
A 		53
B 148.7
(3)
P 		121
(-0.1)
A 		94.3
(-3)
A 		126.6
(0.6)
A 		99.7
(-2.4)
A 		114.3
(-0.8)
P 		54
C 150.5
(2.4)
A 		165.8
(3)
A 		163.5
(2.9)
A 		143.1
(2.1)
A 		13.7
(-3)
A 		94
(0.2)
P 		152
avr 131.7
(2.7) 		135.2
(3) 		123.1
(2) 		133.3
(2.8) 		63.5
(-3) 		110.4
(0.9) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 78.3
(3)
P 		4
(-3)
A 		15.6
(-2.1)
A 		19.5
(-1.7)
A 		74
B 48
(3)
P 		26.5
(-1.4)
A 		18.8
(-3)
A 		29.5
(-0.8)
P 		29
C 45.4
(3)
P 		26.7
(-3)
A 		27.4
(-2.8)
A 		27.5
(-2.7)
P 		19
avr 57.2
(3) 		19.1
(-3) 		20.6
(-2.8) 		25.5
(-2) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 17.7
(-3)
A 		42.2
(3)
A 		24.3
(-1.4)
P 		33
(0.7)
A 		23.3
(-1.6)
A 		29.9
(-0)
A 		25
B 51.7
(3)
P 		40.3
(0.6)
A 		22.9
(-3)
A 		33.5
(-0.8)
A 		40.5
(0.7)
A 		42.6
(1.1)
P 		29
C 55.8
(3)
A 		50.6
(2.4)
A 		41.6
(1.3)
A 		28.8
(-0.2)
A 		4.4
(-3)
A 		31.5
(0.2)
P 		51
avr 41.7
(2.3) 		44.4
(3) 		29.6
(-1.1) 		31.8
(-0.5) 		22.7
(-3) 		34.7
(0.3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186119_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5731
Sequence Type Exemplar sequence
Representative Public ID R12C12.8 NCBI
Target Description R12C12.8 /REP_DB=WormBase Gene ID /WP=CE23928 /TR=Q21964 /GB=AAK71392.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182238(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182238 NCBI Caenorhabditis elegans R12C12.8b (R12C12.8) mRNA, complete cds. 11/11 None
R12C12.8b ENSEMBL cdna:known chromosome:CEL140:II:6057351:6058403:-1 gene:R12C12.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062810 6/11 Cross Hyb Matching Probes None
SNAP00000025500 6/11 Cross Hyb Matching Probes None
GENEFINDER00000025598 6/11 Cross Hyb Matching Probes None
R12C12.8a 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174013 2 1 NM_182238 186119_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6057491-6060163(-) 100.0 100.0
Public Domain and Genome References
Ensembl R12C12.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_872038 R12C12.8b [Caenorhabditis elegans] gb|AAO38611.1| Hypothetical protein R12C12.8b [Caenorhabditis elegans] 1.0E-113
blast NP_495211 R12C12.8a [Caenorhabditis elegans] gb|AAK71392.2| Hypothetical protein R12C12.8a [Caenorhabditis elegans] 1.0E-96
blast T16735 hypothetical protein R12C12.7 - Caenorhabditis elegans 2.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR009543 EMBL-EBI Protein of unknown function DUF1162 3.1E-44
Sequence
Target Sequence 
>C. ELEGANS:186119_S_AT
ggctgattcgaaaggacacttgctcgatatgtattgtcatgtgagacttggcgttgctca
ggccatttcggtatctctttgggtaccctattggattgtcaacaaatctggaataccact
gatcatacaacaagaagctgttaaatgggaagctgctggacaaatggaagaacatgaaaa
agcgaaagatagacatcctctgatgttctcatttgccgatgaaaactgtccgaaggcttg
tcgtttaagctgttcttctttatgtcagtatcacaatgtgtggaggactaggattattgg
caattgttgtattgtcaaccagatgctggacagaactatgatgattggagcttcccgttc
tcctgcagaattgaattcaatactgatgtccttgctgtacttgttacgctgtattccttt
caagcaaccacttccatattcgattttcgttgcttcatcgttgatacgtcatacgtcacg
aagctgcatcattgtctatgtcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGATTCGAAAGGACACTTGCTC 398 539 840 Antisense
ACACTTGCTCGATATGTATTGTCAT 97 111 855 Antisense
AGACTTGGCGTTGCTCAGGCCATTT 461 71 883 Antisense
GGCTTGTCGTTTAAGCTGTTCTTCT 214 537 1074 Antisense
ATGATGATTGGAGCTTCCCGTTCTC 690 43 1177 Antisense
TTCCCGTTCTCCTGCAGAATTGAAT 119 697 1191 Antisense
CTTGCTGTACTTGTTACGCTGTATT 123 219 1230 Antisense
GCTGTATTCCTTTCAAGCAACCACT 468 293 1247 Antisense
TTCGTTGCTTCATCGTTGATACGTC 43 697 1285 Antisense
ACGTCATACGTCACGAAGCTGCATC 396 93 1305 Antisense
GAAGCTGCATCATTGTCTATGTCGG 527 343 1319 Antisense
Sequence Source Affymetrix Proprietary Database