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[186118_at]

Description F35H12.1 /REP_DB=WormBase Gene ID /WP=CE04510 /TR=Q20079 /GB=AAK39228.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 02      4grp_high_8_8 > 24      6grp_total > 31      4grp_total > 39      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 125.4
(3)
P 		35.8
(-3)
P 		66.4
(-1)
P 		90.4
(0.7)
A 		90
B 122.8
(3)
P 		61.1
(-2.5)
P 		67.3
(-2)
P 		55.9
(-3)
P 		67
C 132.7
(3)
P 		52.8
(-2.6)
P 		46.8
(-3)
P 		92.1
(0.2)
P 		86
avr 127
(3) 		49.9
(-3) 		60.2
(-2.2) 		79.5
(-0.7) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 50.8
(-2.7)
A 		136.7
(1.6)
P 		163.4
(3)
P 		80.9
(-1.2)
P 		58.5
(-2.3)
P 		45.2
(-3)
A 		118
B 118.6
(3)
P 		107.5
(2.1)
P 		111.5
(2.4)
P 		98.4
(1.3)
P 		48.1
(-3)
A 		80.4
(-0.3)
P 		71
C 135.2
(3)
P 		108.1
(1.2)
P 		73.7
(-1.1)
P 		116.4
(1.7)
M 		62.3
(-1.9)
P 		45.1
(-3)
A 		90
avr 101.5
(1.4) 		117.4
(3) 		116.2
(2.9) 		98.6
(1.2) 		56.3
(-3) 		56.9
(-2.9) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 45.7
(3)
P 		7.8
(-3)
P 		17.4
(-1.5)
P 		13.2
(-2.1)
A 		38
B 39.2
(3)
P 		15.1
(-2.3)
P 		15.6
(-2.2)
P 		11.9
(-3)
P 		27
C 43.9
(3)
P 		15.2
(-3)
P 		16.3
(-2.8)
P 		15.5
(-2.9)
P 		29
avr 42.9
(3) 		12.7
(-3) 		16.4
(-2.3) 		13.5
(-2.8) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 9.4
(-3)
A 		48.6
(3)
P 		35.6
(1)
P 		20.5
(-1.3)
P 		17.7
(-1.7)
P 		11
(-2.8)
A 		39
B 41.3
(3)
P 		35.8
(1.5)
P 		27.1
(-0.9)
P 		26.1
(-1.2)
P 		19.6
(-3)
A 		30
(-0.1)
P 		22
C 50.1
(3)
P 		33
(0.1)
P 		18.8
(-2.4)
P 		23.4
(-1.6)
M 		20.2
(-2.1)
P 		15.1
(-3)
A 		35
avr 33.6
(1.4) 		39.1
(3) 		27.2
(-0.5) 		23.3
(-1.6) 		19.2
(-2.9) 		18.7
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186118_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18340
Sequence Type Exemplar sequence
Representative Public ID F35H12.1 NCBI
Target Description F35H12.1 /REP_DB=WormBase Gene ID /WP=CE04510 /TR=Q20079 /GB=AAK39228.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075779(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075779 NCBI Caenorhabditis elegans F35H12.1 (F35H12.1) mRNA, complete cds. 11/11 None
F35H12.1 ENSEMBL cdna:known chromosome:CEL140:X:935457:937701:1 gene:F35H12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028612 8/11 Cross Hyb Matching Probes None
GENEFINDER00000028613 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:935456-937701(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35H12.1
Entrez Gene 185333 Entrez gene
SwissProt Q20079 EMBL-EBI
WormBase CE04510 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39228 Hypothetical protein F35H12.1 [Caenorhabditis elegans] ref|NP_508180.1| F35H12.1 [Caenorhabditis elegans] 0.0
blast CAE63597 Hypothetical protein CBG08088 [Caenorhabditis briggsae] 1.0E-109
Sequence
Target Sequence 
>C. ELEGANS:186118_AT
atcggtgccgaacttcaagaatgctacaagtccagatgtgttagactcgaggagtttgca
agagttacatgagaaattggaaaggaacttgacgttaaatgataatgagcggtgtaaaat
gttgaaacacgaagcgcatcgggttatgaaaattgcagaggagaaggcaagcacggcact
ggcagagtatcgaagaggaagatcgaaagcaagtgaggtgccgcgacaagcaaggcagta
tttgagcaaaacaaagttgccggatatccagattatccatcagcagattgaagaagccat
ctgtagaaaaaacatggagcttgttggtcttcttttggaacgggataatctacacatgga
gcatgactctttgagagttgatatcgatgactatactcaacaaaaatcgccggtaagtac
aaatatccgcgtgaactttaacagaattaatttccagttgatactccttgatatgaaacg
gcttctgcaattac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGTGCCGAACTTCAAGAATGCT 352 29 591 Antisense
GAATGCTACAAGTCCAGATGTGTTA 128 331 609 Antisense
GAAACACGAAGCGCATCGGGTTATG 646 355 714 Antisense
GCAAGCACGGCACTGGCAGAGTATC 144 321 757 Antisense
GCAAGTGAGGTGCCGCGACAAGCAA 7 321 799 Antisense
ATATCCAGATTATCCATCAGCAGAT 409 21 854 Antisense
GCTTGTTGGTCTTCTTTTGGAACGG 323 303 909 Antisense
GACTATACTCAACAAAAATCGCCGG 546 371 979 Antisense
AATATCCGCGTGAACTTTAACAGAA 25 173 1012 Antisense
AATTTCCAGTTGATACTCCTTGATA 344 175 1039 Antisense
GATATGAAACGGCTTCTGCAATTAC 562 423 1060 Antisense
Sequence Source Affymetrix Proprietary Database