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[186117_at]

Description R03H10.5 /REP_DB=WormBase Gene ID /WP=CE02841 /TR=Q9GYM0 /GB=AAG00001.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 33.3
(-3)
A 		74
(1.9)
A 		47.5
(-1.3)
A 		83.6
(3)
A 		50
B 6.8
(-3)
A 		66.9
(3)
A 		63.8
(2.7)
A 		66.3
(2.9)
A 		60
C 46.6
(-2.6)
A 		46.1
(-2.7)
A 		42
(-3)
A 		117.5
(3)
P 		76
avr 28.9
(-3) 		62.3
(0.3) 		51.1
(-0.8) 		89.1
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 76.2
(3)
A 		4.9
(-3)
A 		38.9
(-0.1)
A 		46
(0.5)
A 		47.3
(0.6)
A 		24.5
(-1.4)
A 		71
B 46.2
(1.8)
A 		49.1
(2.2)
A 		35
(0.5)
A 		56.1
(3)
P 		5.4
(-3)
A 		46.6
(1.9)
A 		51
C 44.5
(1.3)
A 		37.4
(0.6)
A 		59.7
(3)
A 		8.9
(-2.6)
A 		4.9
(-3)
A 		28.7
(-0.4)
A 		55
avr 55.6
(3) 		30.5
(-1.1) 		44.5
(1.2) 		37
(-0.1) 		19.2
(-3) 		33.3
(-0.7) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 12.1
(-3)
A 		16.1
(3)
A 		12.4
(-2.6)
A 		12.2
(-2.9)
A 		4
B 2.2
(-3)
A 		16.5
(3)
A 		14.8
(2.3)
A 		14.1
(2)
A 		14
C 15.4
(-1.1)
A 		13.3
(-3)
A 		14.7
(-1.7)
A 		19.8
(3)
P 		7
avr 9.9
(-3) 		15.3
(2.9) 		14
(1.5) 		15.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 14.1
(2.9)
A 		1.7
(-3)
A 		8.5
(0.2)
A 		11.7
(1.8)
A 		14.3
(3)
A 		6
(-1)
A 		13
B 16.1
(2.5)
A 		16.3
(2.6)
A 		8.5
(-0.5)
A 		14.9
(2)
P 		2.2
(-3)
A 		17.4
(3)
A 		15
C 16.5
(3)
A 		11.4
(0.9)
A 		15.2
(2.5)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		9.6
(0.2)
A 		15
avr 15.6
(3) 		9.8
(-0.6) 		10.7
(-0.1) 		9.5
(-0.8) 		6
(-3) 		11
(0.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186117_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5589
Sequence Type Exemplar sequence
Representative Public ID R03H10.5 NCBI
Target Description R03H10.5 /REP_DB=WormBase Gene ID /WP=CE02841 /TR=Q9GYM0 /GB=AAG00001.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062331(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062331 NCBI Caenorhabditis elegans R03H10.5 (R03H10.5) mRNA, complete cds. 11/11 None
SNAP00000041942 ENSEMBL cdna:SNAP chromosome:CEL140:II:4169662:4170602:-1 11/11 None
GENEFINDER00000041949 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4169331:4170602:-1 11/11 None
R03H10.5 ENSEMBL cdna:known chromosome:CEL140:II:4169717:4170602:-1 gene:R03H10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4169715-4170601(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R03H10.5
Entrez Gene 187557 Entrez gene
SwissProt Q9GYM0 EMBL-EBI
WormBase CE02841 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00001 Hypothetical protein R03H10.5 [Caenorhabditis elegans] ref|NP_494732.1| R03H10.5 [Caenorhabditis elegans] 4.0E-87
blast AAG00001 Hypothetical protein R03H10.5 [Caenorhabditis elegans] ref|NP_494732.1| R03H10.5 [Caenorhabditis elegans] 7.0E-86
blast AAG00001 Hypothetical protein R03H10.5 [Caenorhabditis elegans] ref|NP_494732.1| R03H10.5 [Caenorhabditis elegans] 3.0E-85
blast AAF99999 Hypothetical protein R03H10.4 [Caenorhabditis elegans] ref|NP_494730.1| R03H10.4 [Caenorhabditis elegans] 6.0E-48
blast AAF99999 Hypothetical protein R03H10.4 [Caenorhabditis elegans] ref|NP_494730.1| R03H10.4 [Caenorhabditis elegans] 1.0E-46
blast AAF99999 Hypothetical protein R03H10.4 [Caenorhabditis elegans] ref|NP_494730.1| R03H10.4 [Caenorhabditis elegans] 5.0E-46
blast AAC68715 Hypothetical protein T10D4.1 [Caenorhabditis elegans] ref|NP_494460.1| T10D4.1 [Caenorhabditis elegans] 4.0E-24
blast AAC68715 Hypothetical protein T10D4.1 [Caenorhabditis elegans] ref|NP_494460.1| T10D4.1 [Caenorhabditis elegans] 2.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 8.6E-11
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 3.9E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000041949 1 153-170
Sequence
Target Sequence 
>C. ELEGANS:186117_AT
tttttcttttcgtcgtgcttatcggcttgtttcattgtgaagcaggctgttatgatagct
gtccatgcccagatatgttggatacattgattgaatcacccgagacaactttgtactctg
aaggagcgggctgtattcggaatgtgacttgtcaggttgatagttatccagttatccatt
ttatgtggacagaatccgagattcccaagccagatgaagctgatgatgattattttctcg
ccactgtcccagcaccaggaatcattgaatacatcgatatgttttcatattttggagtag
tctgtgagaatgatggctggtacgccactaaatatccaaatggagtttattatgaatatg
gtttgggcttccgaactattgggccagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTCTTTTCGTCGTGCTTATCGG 198 675 23 Antisense
TGCTTATCGGCTTGTTTCATTGTGA 596 579 38 Antisense
GAAGCAGGCTGTTATGATAGCTGTC 683 341 61 Antisense
TGATAGCTGTCCATGCCCAGATATG 156 565 75 Antisense
GAATCACCCGAGACAACTTTGTACT 482 327 115 Antisense
AATCCGAGATTCCCAAGCCAGATGA 401 167 215 Antisense
GATGATGATTATTTTCTCGCCACTG 256 411 244 Antisense
ACTGTCCCAGCACCAGGAATCATTG 625 97 265 Antisense
GGCTGGTACGCCACTAAATATCCAA 278 539 337 Antisense
GAATATGGTTTGGGCTTCCGAACTA 643 325 376 Antisense
GGGCTTCCGAACTATTGGGCCAGAC 226 491 387 Antisense
Sequence Source Affymetrix Proprietary Database