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[186116_at]

Description Y41G9A.6 /REP_DB=WormBase Gene ID /WP=CE28362 /TR=Q9N4Z8 /GB=AAF60552.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 19      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 60.4
(-0.1)
A 		103
(3)
A 		21.4
(-3)
A 		84.8
(1.7)
A 		82
B 71.2
(-2)
A 		91
(3)
A 		71.7
(-1.8)
A 		67.1
(-3)
A 		24
C 54.4
(-2.6)
A 		45.2
(-3)
A 		61
(-2.4)
A 		194.3
(3)
A 		149
avr 62
(-2) 		79.7
(-0.3) 		51.4
(-3) 		115.4
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 20.2
(-2.7)
A 		87.6
(3)
A 		70.2
(1.5)
A 		16.6
(-3)
A 		20.4
(-2.7)
A 		17.4
(-2.9)
A 		71
B 54
(-1.3)
A 		88.9
(3)
A 		46.6
(-2.2)
A 		40.4
(-3)
A 		54.5
(-1.3)
A 		62.7
(-0.2)
A 		49
C 46.2
(-0.7)
A 		101.3
(3)
A 		65.4
(0.6)
A 		86.4
(2)
A 		11.3
(-3)
A 		15.1
(-2.7)
A 		90
avr 40.1
(-1.9) 		92.6
(3) 		60.7
(0) 		47.8
(-1.2) 		28.7
(-3) 		31.7
(-2.7) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 22
(2.9)
A 		22.4
(3)
A 		5.6
(-3)
A 		12.4
(-0.6)
A 		17
B 22.7
(3)
A 		22.5
(2.9)
A 		16.6
(-1.4)
A 		14.3
(-3)
A 		8
C 18
(-1.5)
A 		13
(-3)
A 		21.3
(-0.5)
A 		32.8
(3)
A 		20
avr 20.9
(3) 		19.3
(1.5) 		14.5
(-3) 		19.8
(2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 3.7
(-3)
A 		31.2
(3)
A 		15.3
(-0.5)
A 		4.2
(-2.9)
A 		6.2
(-2.5)
A 		4.2
(-2.9)
A 		28
B 18.8
(-0.4)
A 		29.6
(3)
A 		11.3
(-2.8)
A 		10.7
(-3)
A 		22.1
(0.6)
A 		23.4
(1)
A 		19
C 17.1
(-0)
A 		30.9
(3)
A 		16.6
(-0.2)
A 		17.4
(0)
A 		3.7
(-3)
A 		5.1
(-2.7)
A 		27
avr 13.2
(-2.2) 		30.6
(3) 		14.4
(-1.9) 		10.8
(-3) 		10.7
(-3) 		10.9
(-2.9) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186116_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18060
Sequence Type Exemplar sequence
Representative Public ID Y41G9A.6 NCBI
Target Description Y41G9A.6 /REP_DB=WormBase Gene ID /WP=CE28362 /TR=Q9N4Z8 /GB=AAF60552.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076111(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076111 NCBI Caenorhabditis elegans Y41G9A.6 (Y41G9A.6) mRNA, complete cds. 11/11 None
Y41G9A.6 ENSEMBL cdna:known chromosome:CEL140:X:2998294:3003794:-1 gene:Y41G9A.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022742 5/11 Cross Hyb Matching Probes None
SNAP00000022737 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2998293-3002142(-) 90.26 90.26
Public Domain and Genome References
Gene Title
Ensembl Y41G9A.6
Entrez Gene 180586 Entrez gene
SwissProt Q9N4Z8 EMBL-EBI
WormBase CE28362 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508512 Y41G9A.6 [Caenorhabditis elegans] gb|AAF60552.2| Hypothetical protein Y41G9A.6 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186116_AT
aaaatgcatgcttttcagttcctcctttttcaggcttagctcagcaaatgacatcacatc
aatccacttccttggagcaaactgagaaaccttcgtttttgaatcagaatgctcaagtgc
cggggtccgcagttgggagctcttttctaaattcaccagtacaaactcaaaatctatcac
agaatagctatggaaaaggtttcttggctggaattactgtggtcaattccttgactcaac
accaacgattcgcttcgactttgcctcaaacgtcagcaaagaacaataacaacacttgga
atgctcagcaagctcagaatggcggaataccgggagttcatagaaacaatgaaattcaaa
ctgtggtatcatccgaacctaatcacattgacttttctgcaatcaatcagttatcacaca
cccagagcccggtaaatttgcaaattcgtgtgccgcaacaaccattgggtgcagccgggt
tcccacctgtgacaccaggattattcgaaaataacccccaaaataccgatctggcggacc
tgctacaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGCATGCTTTTCAGTTCCTCC 301 133 1052 Antisense
AATGACATCACATCAATCCACTTCC 47 165 1098 Antisense
GGAGCTCTTTTCTAAATTCACCAGT 547 521 1187 Antisense
AACACCAACGATTCGCTTCGACTTT 193 135 1289 Antisense
CTTCGACTTTGCCTCAAACGTCAGC 412 219 1304 Antisense
GTATCATCCGAACCTAATCACATTG 113 455 1417 Antisense
CACACACCCAGAGCCCGGTAAATTT 387 193 1466 Antisense
GCCGCAACAACCATTGGGTGCAGCC 567 285 1503 Antisense
GTTCCCACCTGTGACACCAGGATTA 548 439 1530 Antisense
TAACCCCCAAAATACCGATCTGGCG 428 569 1563 Antisense
CGATCTGGCGGACCTGCTACAAAAT 296 245 1578 Antisense
Sequence Source Affymetrix Proprietary Database