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[186113_s_at]

Description Y39A1A.5A /REP_DB=WormBase Gene ID /WP=CE19123 /TR=Q9XX19 /GB=CAA21021.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 69      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 93      6grp_total > 69      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 589
1 2 3 4 range
A 316
(-1.3)
P 		205.8
(-2.6)
P 		176.8
(-3)
P 		656.9
(3)
P 		480
B 435.1
(1.5)
P 		263.5
(-1.2)
P 		150.2
(-3)
P 		532.7
(3)
P 		383
C 324.3
(-1.6)
P 		273.6
(-2.2)
P 		197.1
(-3)
P 		739.2
(3)
P 		542
avr 358.5
(-0.6) 		247.6
(-2.1) 		174.7
(-3) 		642.9
(3) 		468

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 407
1 2 3 4 5 6 range
A 315.5
(-1)
P 		396.8
(0.2)
P 		181.3
(-3)
P 		219.1
(-2.4)
P 		301.1
(-1.2)
P 		587.9
(3)
P 		407
B 500.9
(1.3)
P 		426.6
(-0.4)
P 		304.7
(-3)
P 		313.9
(-2.8)
P 		438.6
(-0.1)
P 		581.2
(3)
P 		277
C 362.9
(-0.4)
P 		212.1
(-3)
P 		286.6
(-1.7)
P 		262.9
(-2.1)
P 		485.6
(1.6)
P 		565.6
(3)
P 		354
avr 393.1
(-0.5) 		345.2
(-1.4) 		257.5
(-3) 		265.3
(-2.9) 		408.4
(-0.2) 		578.2
(3) 		321
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 115.1
(3)
P 		44.7
(-3)
P 		46.2
(-2.9)
P 		96.2
(1.4)
P 		70
B 138.7
(3)
P 		65.1
(-1.3)
P 		34.8
(-3)
P 		113.5
(1.5)
P 		104
C 107.4
(1.2)
P 		78.7
(-1.9)
P 		68.7
(-3)
P 		124.6
(3)
P 		56
avr 120.4
(3) 		62.8
(-1.9) 		49.9
(-3) 		111.4
(2.2) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 58.2
(-1.9)
P 		141.1
(2.9)
P 		39.5
(-3)
P 		55.6
(-2.1)
P 		90.9
(-0)
P 		143.1
(3)
P 		104
B 174.3
(1.2)
P 		142
(-0.1)
P 		74
(-3)
P 		83.1
(-2.6)
P 		178.2
(1.4)
P 		216.7
(3)
P 		143
C 134.5
(0.6)
P 		64.7
(-2.5)
P 		72.9
(-2.1)
P 		52.9
(-3)
P 		157.1
(1.6)
P 		189.3
(3)
P 		136
avr 122.3
(-0) 		115.9
(-0.3) 		62.1
(-3) 		63.9
(-2.9) 		142.1
(1) 		183
(3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186113_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7035
Sequence Type Exemplar sequence
Representative Public ID Y39A1A.5A NCBI
Target Description Y39A1A.5A /REP_DB=WormBase Gene ID /WP=CE19123 /TR=Q9XX19 /GB=CAA21021.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066938 NCBI Caenorhabditis elegans Y39A1A.24 (Y39A1A.24) mRNA, complete cds. 11/11 A 
SNAP00000012906 ENSEMBL cdna:SNAP chromosome:CEL140:III:10613792:10614762:1 11/11 None
GENEFINDER00000012942 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10613792:10614762:1 11/11 None
Y39A1A.24 ENSEMBL cdna:known chromosome:CEL140:III:10613444:10614807:1 gene:Y39A1A.24 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10609960-10614758(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A1A.24
Entrez Gene 3564902 Entrez gene
SwissProt Q9XX20 EMBL-EBI
WormBase CE19124 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21020 Hypothetical protein Y39A1A.24 [Caenorhabditis elegans] ref|NP_499339.1| Y39A1A.24 [Caenorhabditis elegans] 4.0E-55
blast T26732 hypothetical protein Y39A1A.5a - Caenorhabditis elegans 2.0E-49
blast CAE71439 Hypothetical protein CBG18350 [Caenorhabditis briggsae] 4.0E-33
Sequence
Target Sequence 
>C. ELEGANS:186113_S_AT
cggctggtccaattctcgaagaaatggaggcacttgtgctcaaaattgcgagcatcttca
agaaacaggcggccggaaataccgtatccgcatcgaaaagaggatcgacacagagtccag
tcatccgaacagctgaagcatcgactcagagagcatcgccggcgattgcacaagttgaaa
agtttgaaagtgttcgtcaaccgagagaaccgagaagccgatcgaaacatcatgcaaagc
atc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGCTGGTCCAATTCTCGAAGAAAT 43 243 1310 Antisense
GAAGAAATGGAGGCACTTGTGCTCA 645 337 1327 Antisense
GCATCTTCAAGAAACAGGCGGCCGG 104 309 1361 Antisense
GCGGCCGGAAATACCGTATCCGCAT 582 291 1378 Antisense
GATCGACACAGAGTCCAGTCATCCG 514 417 1412 Antisense
GTCCAGTCATCCGAACAGCTGAAGC 23 477 1424 Antisense
TCCGAACAGCTGAAGCATCGACTCA 710 595 1433 Antisense
AGCATCGACTCAGAGAGCATCGCCG 662 77 1446 Antisense
TCAGAGAGCATCGCCGGCGATTGCA 257 623 1455 Antisense
GTGTTCGTCAACCGAGAGAACCGAG 461 485 1499 Antisense
CGATCGAAACATCATGCAAAGCATC 237 249 1528 Antisense
Sequence Source Affymetrix Proprietary Database