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[186111_at]

Description F54D10.8 /REP_DB=WormBase Gene ID /WP=CE19458 /TR=Q9TZ82 /GB=AAC68779.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 6.5
(-2.8)
A 		5.1
(-3)
A 		56.4
(3)
A 		7.2
(-2.8)
A 		51
B 8.6
(-1.9)
A 		26.3
(3)
A 		17.4
(0.6)
A 		4.5
(-3)
A 		22
C 3.7
(-3)
A 		12.6
(-1.2)
A 		26.6
(1.5)
A 		33.9
(3)
A 		30
avr 6.3
(-3) 		14.7
(-1.1) 		33.5
(3) 		15.2
(-1) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 9.2
(-2.4)
A 		22.9
(0.8)
A 		32.5
(3)
A 		7.2
(-2.9)
A 		18.5
(-0.3)
A 		6.7
(-3)
A 		26
B 7.5
(-1)
A 		4
(-2.6)
A 		5
(-2.2)
A 		16.1
(3)
A 		6.3
(-1.6)
A 		3.2
(-3)
A 		13
C 6.9
(-0.7)
A 		7
(-0.6)
A 		7.9
(-0.1)
A 		13.3
(3)
A 		11
(1.7)
A 		2.9
(-3)
A 		10
avr 7.9
(-1) 		11.3
(0.9) 		15.1
(3) 		12.2
(1.4) 		11.9
(1.2) 		4.3
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.4
(-2.4)
A 		1.1
(-3)
A 		14.8
(3)
A 		1.1
(-3)
A 		14
B 2.7
(-1.1)
A 		6.5
(3)
A 		4
(0.3)
A 		1
(-3)
A 		6
C 1.2
(-3)
A 		3.6
(-1.2)
A 		9.3
(3)
A 		5.7
(0.3)
A 		8
avr 2.1
(-3) 		3.7
(-1.7) 		9.4
(3) 		2.6
(-2.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.7
(-2.9)
A 		8.1
(3)
A 		7.1
(2.1)
A 		1.8
(-2.8)
A 		5.6
(0.7)
A 		1.6
(-3)
A 		7
B 2.6
(-0.3)
A 		1.3
(-2.8)
A 		1.2
(-3)
A 		4.3
(3)
A 		2.6
(-0.3)
A 		1.2
(-3)
A 		3
C 2.5
(0.5)
A 		2.1
(-0.5)
A 		2
(-0.7)
A 		2.7
(0.9)
A 		3.6
(3)
A 		1
(-3)
A 		3
avr 2.3
(-0.7) 		3.8
(2.8) 		3.4
(1.8) 		2.9
(0.7) 		3.9
(3) 		1.3
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186111_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5746
Sequence Type Exemplar sequence
Representative Public ID F54D10.8 NCBI
Target Description F54D10.8 /REP_DB=WormBase Gene ID /WP=CE19458 /TR=Q9TZ82 /GB=AAC68779.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062262 NCBI Caenorhabditis elegans F54D10.8 (F54D10.8) mRNA, complete cds. 11/11 None
SNAP00000030976 ENSEMBL cdna:SNAP chromosome:CEL140:II:3825706:3827708:-1 11/11 None
GENEFINDER00000030982 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3825706:3827872:-1 11/11 None
F54D10.8 ENSEMBL cdna:known chromosome:CEL140:II:3825706:3827872:-1 gene:F54D10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3825704-3827871(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54D10.8
Entrez Gene 186235 Entrez gene
SwissProt Q9TZ82 EMBL-EBI
WormBase CE35979 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68779 Hypothetical protein F54D10.8 [Caenorhabditis elegans] ref|NP_494663.2| F54D10.8 [Caenorhabditis elegans] 0.0
blast CAE62336 Hypothetical protein CBG06409 [Caenorhabditis briggsae] 1.0E-159
blast CAE62336 Hypothetical protein CBG06409 [Caenorhabditis briggsae] 1.0E-146
blast CAE62384 Hypothetical protein CBG06470 [Caenorhabditis briggsae] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 5.9E-123
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.4E-115
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494663.2 1 7-23
F54D10.8 1 7-23
GENEFINDER00000030982 1 7-23
Sequence
Target Sequence 
>C. ELEGANS:186111_AT
cacctccgatccaaatatcactcaaaatggatcacctttttggatctggacgaacgaatc
tcgtctggaaccgagtataataacctgctggaagtcatagaatcccaacccagaagcgta
ggggagcttcacgtgagcgtcttgaatattctaaaatatgaagatacacctgaaaagttc
acttcaatggaacagctgaaagaagatatgatgttccggaaatggacgaacaccatagat
cccacgtggaatgcatcaaaggctattgttagaccggagcagataggaataatgtttatt
cactatgcaattgctaagcagtttggagtcaacacggtcaagcttaacgcatctcaagcc
gctgtcagacactaccgaaataccctacacagaatggaggctcccgattggcatcccacg
gctccaaccaagtcgcccacagtccaaagatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCTCCGATCCAAATATCACTCAA 649 201 958 Antisense
TCACCTTTTTGGATCTGGACGAACG 237 617 989 Antisense
GAAGTCATAGAATCCCAACCCAGAA 359 335 1048 Antisense
GTAGGGGAGCTTCACGTGAGCGTCT 472 455 1075 Antisense
TGGACGAACACCATAGATCCCACGT 259 547 1180 Antisense
ATCCCACGTGGAATGCATCAAAGGC 486 37 1196 Antisense
TGGAGTCAACACGGTCAAGCTTAAC 134 549 1281 Antisense
CAAGCTTAACGCATCTCAAGCCGCT 201 183 1296 Antisense
TCAGACACTACCGAAATACCCTACA 527 623 1322 Antisense
AGAATGGAGGCTCCCGATTGGCATC 585 75 1348 Antisense
CAAGTCGCCCACAGTCCAAAGATGG 388 155 1386 Antisense
Sequence Source Affymetrix Proprietary Database