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[186110_at] 7TM chemoreceptor, srv family

Description T13A10.6 /REP_DB=WormBase Gene ID /WP=CE07487 /TR=Q22444 /GB=AAB38117.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 12      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 29.2
(-1.3)
A 		32.8
(-1.1)
A 		2.1
(-3)
A 		100.4
(3)
P 		98
B 18.2
(-2.7)
A 		17
(-2.9)
A 		16.6
(-3)
A 		44.2
(3)
A 		28
C 31.4
(-1.3)
A 		2.6
(-3)
A 		7.6
(-2.7)
A 		104.4
(3)
P 		102
avr 26.3
(-1.6) 		17.5
(-2.3) 		8.8
(-3) 		83
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 3.1
(-3)
A 		23.4
(-0.3)
A 		48.3
(3)
A 		5.8
(-2.6)
A 		44.2
(2.5)
A 		12.4
(-1.8)
A 		45
B 2.6
(-3)
A 		25.8
(1.9)
A 		30.9
(3)
A 		21.2
(0.9)
A 		7.6
(-1.9)
A 		2.8
(-3)
A 		28
C 11.7
(-1.4)
A 		40.4
(3)
A 		1.4
(-3)
A 		38
(2.6)
A 		15.7
(-0.8)
A 		20.1
(-0.1)
A 		39
avr 5.8
(-3) 		29.9
(3) 		26.9
(2.3) 		21.7
(1) 		22.5
(1.2) 		11.8
(-1.5) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.6
(1.3)
A 		7.1
(-0.2)
A 		0.5
(-3)
A 		14.7
(3)
P 		14
B 5.8
(-0.9)
A 		4.2
(-2.7)
A 		3.9
(-3)
A 		9.4
(3)
A 		6
C 10.4
(0.4)
A 		0.7
(-3)
A 		2.7
(-2.3)
A 		17.6
(3)
P 		17
avr 8.9
(0.4) 		4
(-2.2) 		2.4
(-3) 		13.9
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.6
(-3)
A 		8.3
(0.6)
A 		10.5
(1.7)
A 		1.5
(-2.6)
A 		13.3
(3)
A 		3
(-1.9)
A 		13
B 0.9
(-3)
A 		8.6
(3)
A 		7.5
(2.1)
A 		5.6
(0.7)
A 		3.1
(-1.3)
A 		1
(-2.9)
A 		8
C 4.3
(-1)
A 		12.3
(3)
A 		0.4
(-3)
A 		7.6
(0.6)
A 		5.1
(-0.6)
A 		6.7
(0.2)
A 		12
avr 1.9
(-3) 		9.7
(3) 		6.1
(0.2) 		4.9
(-0.7) 		7.2
(1.1) 		3.6
(-1.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186110_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10829
Sequence Type Exemplar sequence
Representative Public ID T13A10.6 NCBI
Target Description T13A10.6 /REP_DB=WormBase Gene ID /WP=CE07487 /TR=Q22444 /GB=AAB38117.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068547(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068547 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-29) (srv-29) mRNA, complete cds. 11/11 None
SNAP00000039091 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6264878:6266151:-1 11/11 None
GENEFINDER00000039104 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6264878:6267064:-1 11/11 None
T13A10.6 ENSEMBL cdna:known chromosome:CEL140:IV:6264878:6266583:-1 gene:T13A10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6264883-6266589(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srv family
Gene Symbol srv-29
Ensembl T13A10.6
Entrez Gene 188460 Entrez gene
SwissProt Q22444 EMBL-EBI
WormBase CE38105 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500948 Serpentine Receptor, class V family member (srv-29) [Caenorhabditis elegans] gb|AAB38117.2| Serpentine receptor, class v protein 29 [Caenorhabditis elegans] 1.0E-173
blast NP_500948 Serpentine Receptor, class V family member (srv-29) [Caenorhabditis elegans] gb|AAB38117.2| Serpentine receptor, class v protein 29 [Caenorhabditis elegans] 1.0E-162
blast NP_500948 Serpentine Receptor, class V family member (srv-29) [Caenorhabditis elegans] gb|AAB38117.2| Serpentine receptor, class v protein 29 [Caenorhabditis elegans] 1.0E-139
blast NP_001023383 Serpentine Receptor, class V family member (srv-28) [Caenorhabditis elegans] gb|AAP31428.1| Serpentine receptor, class v protein 28 [Caenorhabditis elegans] 1.0E-116
blast CAE61575 Hypothetical protein CBG05489 [Caenorhabditis briggsae] 1.0E-111
blast NP_001023383 Serpentine Receptor, class V family member (srv-28) [Caenorhabditis elegans] gb|AAP31428.1| Serpentine receptor, class v protein 28 [Caenorhabditis elegans] 1.0E-106
blast CAE61575 Hypothetical protein CBG05489 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500948.2 7 9-31,44-66,94-116,129-151,177-199,218-240,255-277
T13A10.6 7 9-31,44-66,94-116,129-151,177-199,218-240,255-277
SNAP00000039091 5 36-58,71-93,113-135,152-174,194-213
GENEFINDER00000039104 6 48-70,90-112,133-152,179-201,220-242,257-279
Sequence
Target Sequence 
>C. ELEGANS:186110_AT
gtcatttctgcaccatataatcgattgactgcaatagttcaggaatgttctacgtggaag
atcatagcagtttattggattgttccgactttgataagtattgtggttttgaaggatgca
gaaataaaatatgattcgttggatattatggaactagtggtatctagaggaattattacg
agaaatacactaatggctcttataactgtggctatcacttgtcttatctgcgtagcatcc
tatgtaatcatgtggattactctccgaaaacattccgctggaatcacaaaatctgtacaa
agagaactgcttctggctgtacaagttttctcattgttgtgtgcattttttataatgttc
ctgtattatttattgcaaaattacttctcgcaaacccaaaatgcaggcccagtgtataca
atgcgtgctttgtatccaatcgccaatggtactttgtcatatatcaacccattttgcata
cttcttctaaatcgagatttttctagacaattcatgagaacactcaagtgcgcgggagtt
cgagttagcgaagtcaaagtatctacagctacaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCATTTCTGCACCATATAATCGAT 575 467 415 Antisense
GGCTCTTATAACTGTGGCTATCACT 109 539 609 Antisense
ATCACTTGTCTTATCTGCGTAGCAT 26 29 628 Antisense
GATTACTCTCCGAAAACATTCCGCT 105 431 669 Antisense
ACTGCTTCTGGCTGTACAAGTTTTC 43 99 720 Antisense
AAGTTTTCTCATTGTTGTGTGCATT 312 157 737 Antisense
CAAACCCAAAATGCAGGCCCAGTGT 233 191 805 Antisense
GGCCCAGTGTATACAATGCGTGCTT 701 541 820 Antisense
ATGCGTGCTTTGTATCCAATCGCCA 6 43 835 Antisense
CAAGTGCGCGGGAGTTCGAGTTAGC 485 183 939 Antisense
GTCAAAGTATCTACAGCTACACCAC 184 465 967 Antisense
Sequence Source Affymetrix Proprietary Database