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[186109_at]

Description ZK1240.6 /REP_DB=WormBase Gene ID /WP=CE15539 /TR=O16681 /GB=AAB66143.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 0.9
(-3)
A 		4
(3)
A 		1.5
(-1.8)
A 		2.2
(-0.5)
A 		3
B 2.3
(3)
A 		2.3
(3)
A 		0.9
(-3)
A 		1.1
(-2.1)
A 		1
C 1
(-2.9)
A 		3.1
(-2.6)
A 		0.6
(-3)
A 		42.6
(3)
A 		42
avr 1.4
(-2.8) 		3.1
(-2.1) 		1
(-3) 		15.3
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.1
(-1.9)
A 		2
(-2)
A 		3.6
(0.6)
A 		5.1
(3)
A 		1.4
(-3)
A 		1.5
(-2.8)
A 		4
B 0.6
(-3)
A 		1.2
(-0.8)
A 		2.2
(3)
A 		1.3
(-0.4)
A 		1.9
(1.9)
A 		1.2
(-0.8)
A 		2
C 0.8
(-3)
A 		1.7
(-1.2)
A 		3
(1.4)
A 		3.8
(3)
A 		1.4
(-1.8)
A 		1.2
(-2.2)
A 		3
avr 1.2
(-3) 		1.6
(-1.9) 		2.9
(1.6) 		3.4
(3) 		1.6
(-1.9) 		1.3
(-2.7) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.3
(-3)
A 		0.9
(3)
A 		0.4
(-2)
A 		0.3
(-3)
A 		1
B 0.7
(3)
A 		0.6
(1.8)
A 		0.2
(-3)
A 		0.2
(-3)
A 		1
C 0.3
(-2.9)
A 		0.9
(-2.4)
A 		0.2
(-3)
A 		7.2
(3)
A 		7
avr 0.4
(-2.7) 		0.8
(-1.7) 		0.3
(-3) 		2.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.7
(-1)
A 		0.8
(-0.3)
A 		1.3
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1
B 0.2
(-3)
A 		0.4
(-1)
A 		0.5
(-0)
A 		0.3
(-2)
A 		0.8
(3)
A 		0.5
(-0)
A 		1
C 0.3
(-3)
A 		0.5
(-0.6)
A 		0.8
(3)
A 		0.8
(3)
A 		0.4
(-1.8)
A 		0.4
(-1.8)
A 		1
avr 0.3
(-3) 		0.5
(-0.6) 		0.7
(1.8) 		0.8
(3) 		0.5
(-0.6) 		0.4
(-1.8) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186109_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5412
Sequence Type Exemplar sequence
Representative Public ID ZK1240.6 NCBI
Target Description ZK1240.6 /REP_DB=WormBase Gene ID /WP=CE15539 /TR=O16681 /GB=AAB66143.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061839(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061839 NCBI Caenorhabditis elegans ZK1240.6 (ZK1240.6) mRNA, complete cds. 11/11 None
SNAP00000039225 ENSEMBL cdna:SNAP chromosome:CEL140:II:2322415:2322908:-1 11/11 None
ZK1240.6 ENSEMBL cdna:known chromosome:CEL140:II:2322415:2322908:-1 gene:ZK1240.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2322413-2322907(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1240.6
Entrez Gene 191541 Entrez gene
SwissProt O16681 EMBL-EBI
WormBase CE15539 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66143 Hypothetical protein ZK1240.6 [Caenorhabditis elegans] ref|NP_494240.1| ZK1240.6 [Caenorhabditis elegans] 2.0E-73
blast AAB66144 Hypothetical protein ZK1240.8 [Caenorhabditis elegans] ref|NP_494242.1| ZK1240.8 [Caenorhabditis elegans] 9.0E-45
blast AAL11110 Hypothetical protein ZK1240.9 [Caenorhabditis elegans] ref|NP_494238.2| ZK1240.9 [Caenorhabditis elegans] 6.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.3E-8
Sequence
Target Sequence 
>C. ELEGANS:186109_AT
gatgaatctcatgttccaagagtcttaacatgtggtcactcaatttgtcagagctgtgcg
gccaaacaaatgtcgaattcattgattttgtgtaaaacatgccctgaagaaacaataaca
aaagtccgagatggagatgttcggaatctgcagaaaaattttggtctgatgcagactata
gagatgtttcaacaggatctaccactaaaatgcaaagagcatcaatataatctcgcggag
tttgtatgtattgagcccgactgtccctcaatcgacaagtcgatgtgtcgggcttgtgaa
gag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAATCTCATGTTCCAAGAGTCT 155 413 61 Antisense
CCAAGAGTCTTAACATGTGGTCACT 194 275 76 Antisense
GTGGTCACTCAATTTGTCAGAGCTG 256 489 92 Antisense
GAGCTGTGCGGCCAAACAAATGTCG 97 387 111 Antisense
GATTTTGTGTAAAACATGCCCTGAA 558 429 144 Antisense
GATGGAGATGTTCGGAATCTGCAGA 162 407 190 Antisense
GATGTTTCAACAGGATCTACCACTA 618 409 243 Antisense
AAGAGCATCAATATAATCTCGCGGA 61 155 275 Antisense
AATCTCGCGGAGTTTGTATGTATTG 527 169 289 Antisense
TTGTATGTATTGAGCCCGACTGTCC 458 707 302 Antisense
GTCGATGTGTCGGGCTTGTGAAGAG 576 473 339 Antisense
Sequence Source Affymetrix Proprietary Database