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[186107_s_at]

Description F36H12.9 /REP_DB=WormBase Gene ID /WP=CE09980 /TR=O76711 /GB=AAC26933.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 37.3
(-1.8)
A 		32.7
(-3)
A 		52.2
(2.2)
P 		55.1
(3)
A 		22
B 45.2
(2.9)
A 		45.5
(3)
P 		41.5
(1)
A 		33.2
(-3)
A 		12
C 28.4
(-2)
A 		41.3
(-1.4)
A 		8.3
(-3)
A 		128.7
(3)
P 		120
avr 37
(-2.5) 		39.8
(-2.1) 		34
(-3) 		72.3
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 21.5
(-2.9)
A 		18
(-3)
A 		34.7
(-2.6)
P 		75.9
(-1.7)
P 		157.8
(0.2)
P 		280.3
(3)
P 		262
B 28.5
(-2.9)
A 		25.1
(-3)
A 		27.7
(-2.9)
A 		54.4
(-1.8)
A 		117.8
(0.9)
P 		167.6
(3)
P 		143
C 42.7
(-2)
A 		55.9
(-1.5)
A 		30.6
(-2.5)
A 		19.5
(-3)
A 		127.4
(1.5)
P 		163.5
(3)
P 		144
avr 30.9
(-3) 		33
(-2.9) 		31
(-3) 		49.9
(-2.3) 		134.3
(0.6) 		203.8
(3) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 13.6
(2.9)
A 		7.1
(-3)
A 		13.7
(3)
P 		8.1
(-2.1)
A 		7
B 14.4
(3)
A 		11.2
(0.4)
P 		9.6
(-0.9)
A 		7.1
(-3)
A 		7
C 9.4
(-0.9)
A 		11.9
(-0.1)
A 		2.9
(-3)
A 		21.7
(3)
P 		19
avr 12.5
(3) 		10.1
(-0.8) 		8.7
(-3) 		12.3
(2.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 4
(-3)
A 		6.4
(-2.8)
A 		7.6
(-2.7)
P 		19.3
(-1.6)
P 		47.6
(1.1)
P 		68.3
(3)
P 		64
B 9.9
(-2.7)
A 		8.3
(-2.8)
A 		6.7
(-3)
A 		14.4
(-2.2)
A 		47.9
(1.4)
P 		62.5
(3)
P 		56
C 15.8
(-1.6)
A 		17.1
(-1.4)
A 		7.8
(-2.5)
A 		3.9
(-3)
A 		41.2
(1.4)
P 		54.7
(3)
P 		51
avr 9.9
(-2.7) 		10.6
(-2.6) 		7.4
(-3) 		12.5
(-2.4) 		45.6
(1.2) 		61.8
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186107_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10772
Sequence Type Exemplar sequence
Representative Public ID F36H12.9 NCBI
Target Description F36H12.9 /REP_DB=WormBase Gene ID /WP=CE09980 /TR=O76711 /GB=AAC26933.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068315(11), NM_068357(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068315 NCBI Caenorhabditis elegans R13H9.6 (R13H9.6) mRNA, complete cds. 11/11 None
NM_068357 NCBI Caenorhabditis elegans F36H12.9 (F36H12.9) mRNA, complete cds. 11/11 None
SNAP00000002637 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5257059:5258297:1 11/11 None
GENEFINDER00000002653 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5257059:5258297:1 11/11 None
SNAP00000029407 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5067354:5068592:-1 11/11 None
GENEFINDER00000029415 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5067354:5068454:-1 11/11 None
R13H9.6 ENSEMBL cdna:known chromosome:CEL140:IV:5067354:5068592:-1 gene:R13H9.6 11/11 None
F36H12.9 ENSEMBL cdna:known chromosome:CEL140:IV:5257059:5258297:1 gene:F36H12.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034130 1/11 Cross Hyb Matching Probes None
SNAP00000034133 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034135 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034136 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5257064-5258303(+) 100.0 100.0
chrIV:5067359-5068598(-) 99.91 99.91
Public Domain and Genome References
Gene Title

Ensembl R13H9.6
F36H12.9
Entrez Gene 177277 Entrez gene
177303 Entrez gene
SwissProt O76711 EMBL-EBI
Q966G1 EMBL-EBI
WormBase CE09980 Wormbase
CE07450 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK85495 Hypothetical protein R13H9.6 [Caenorhabditis elegans] ref|NP_500716.1| R13H9.6 [Caenorhabditis elegans] 0.0
blast AAC26933 Hypothetical protein F36H12.9 [Caenorhabditis elegans] ref|NP_500758.1| F36H12.9 [Caenorhabditis elegans] 0.0
blast CAE64351 Hypothetical protein CBG09038 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.5E-5
Pfam IPR000719 EMBL-EBI Protein kinase 3.7E-5
Pfam IPR000719 EMBL-EBI Protein kinase 3.7E-5
Sequence
Target Sequence 
>C. ELEGANS:186107_S_AT
atcttcgagcagcccgtacaactgcaccattccgtggaactactcgatatgctccattgg
cttcgatgctccagcaagatcaatcacgaaaagatgacattgaatcctggctctacatgg
ttgtcgaatggacttctggaggtttgccgtggcgcaagttgaaggctcacgatcgagaga
aggttctgcaatacaaacaagatctccgtacaaaaccggatattctggacgactttctct
tcttgtgcccgaagaaagagtttaccagaattctgaagtacttggatactcttggatact
acgcagtccctgactacaaattcatttacttctgtgtccagcatgctgccaatgctaata
agatcaaggatgctgatccactggattgggatcccgaaactccgtatatgggtcccattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTCGAGCAGCCCGTACAACTGC 699 29 566 Antisense
TACAACTGCACCATTCCGTGGAACT 671 641 582 Antisense
GAACTACTCGATATGCTCCATTGGC 609 349 602 Antisense
GAATCCTGGCTCTACATGGTTGTCG 174 331 667 Antisense
ATGGACTTCTGGAGGTTTGCCGTGG 253 53 693 Antisense
CGGATATTCTGGACGACTTTCTCTT 504 243 782 Antisense
TACTCTTGGATACTACGCAGTCCCT 85 645 852 Antisense
AATTCATTTACTTCTGTGTCCAGCA 292 177 884 Antisense
GTGTCCAGCATGCTGCCAATGCTAA 39 487 899 Antisense
GGATTGGGATCCCGAAACTCCGTAT 377 507 948 Antisense
GAAACTCCGTATATGGGTCCCATTG 562 357 961 Antisense
Sequence Source Affymetrix Proprietary Database