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[186106_at]

Description T14G12.6 /REP_DB=WormBase Gene ID /WP=CE04967 /TR=Q22512 /GB=AAA82438.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 56      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 26.2
(2.3)
A 		23.5
(1.6)
A 		29.4
(3)
A 		3.2
(-3)
A 		26
B 1.1
(-3)
A 		19.4
(-0.1)
A 		38.8
(3)
A 		3.7
(-2.6)
A 		38
C 6.8
(-3)
A 		30.4
(1.9)
A 		35.7
(3)
A 		18.8
(-0.5)
A 		29
avr 11.4
(-2.4) 		24.4
(0.6) 		34.6
(3) 		8.6
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.3
(-2.8)
A 		2.2
(-1.4)
A 		4.9
(3)
A 		1.3
(-2.8)
A 		1.2
(-3)
A 		1.9
(-1.9)
A 		4
B 2.4
(-0.1)
A 		2.5
(0.1)
A 		2
(-1.2)
A 		1.3
(-3)
A 		2
(-1.2)
A 		3.6
(3)
A 		2
C 1.1
(-3)
A 		4.4
(2.7)
A 		4.6
(3)
A 		2.1
(-1.3)
A 		1.1
(-3)
A 		1.6
(-2.1)
A 		4
avr 1.6
(-2.5) 		3
(1) 		3.8
(3) 		1.6
(-2.5) 		1.4
(-3) 		2.4
(-0.5) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.5
(3)
A 		5.1
(0.1)
A 		7.7
(1.8)
A 		0.5
(-3)
A 		9
B 0.4
(-3)
A 		4.8
(0.1)
A 		9
(3)
A 		0.8
(-2.7)
A 		9
C 2.3
(-3)
A 		8.7
(0.8)
A 		12.4
(3)
A 		3.2
(-2.5)
A 		10
avr 4.1
(-1.1) 		6.2
(0.4) 		9.7
(3) 		1.5
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.8
(1)
A 		1.1
(3)
A 		0.3
(-2.3)
A 		0.4
(-1.7)
A 		0.5
(-1)
A 		1
B 0.8
(0)
A 		0.8
(0)
A 		0.5
(-1.8)
A 		0.3
(-3)
A 		0.8
(0)
A 		1.3
(3)
A 		1
C 0.4
(-3)
A 		1.3
(3)
A 		1.2
(2.3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.5
(-2.3)
A 		1
avr 0.5
(-1.3) 		1
(3) 		0.9
(2.1) 		0.3
(-3) 		0.5
(-1.3) 		0.8
(1.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186106_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18267
Sequence Type Exemplar sequence
Representative Public ID T14G12.6 NCBI
Target Description T14G12.6 /REP_DB=WormBase Gene ID /WP=CE04967 /TR=Q22512 /GB=AAA82438.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076246(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076246 NCBI Caenorhabditis elegans T14G12.6 (T14G12.6) mRNA, complete cds. 11/11 None
SNAP00000013398 ENSEMBL cdna:SNAP chromosome:CEL140:X:3756951:3758423:-1 9/11 None
GENEFINDER00000013407 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3756951:3759363:-1 11/11 None
T14G12.6 ENSEMBL cdna:known chromosome:CEL140:X:3756951:3759306:-1 gene:T14G12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3756951-3759307(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T14G12.6
Entrez Gene 188511 Entrez gene
SwissProt Q22512 EMBL-EBI
WormBase CE04967 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508647 T14G12.6 [Caenorhabditis elegans] gb|AAA82438.1| Hypothetical protein T14G12.6 [Caenorhabditis elegans] 0.0
blast NP_508647 T14G12.6 [Caenorhabditis elegans] gb|AAA82438.1| Hypothetical protein T14G12.6 [Caenorhabditis elegans] 6.0E-92
blast AAC26277 Hypothetical protein F16G10.9 [Caenorhabditis elegans] ref|NP_494263.1| F16G10.9 [Caenorhabditis elegans] 5.0E-80
blast AAC26277 Hypothetical protein F16G10.9 [Caenorhabditis elegans] ref|NP_494263.1| F16G10.9 [Caenorhabditis elegans] 2.0E-78
blast AAC26277 Hypothetical protein F16G10.9 [Caenorhabditis elegans] ref|NP_494263.1| F16G10.9 [Caenorhabditis elegans] 1.0E-72
blast AAC26276 Hypothetical protein F16G10.8 [Caenorhabditis elegans] ref|NP_494262.1| F16G10.8 [Caenorhabditis elegans] 2.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 7.0E-31
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 3.5E-78
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 3.5E-78
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 7.0E-31
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 3.5E-78
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508647.1 1 134-156
T14G12.6 1 134-156
Sequence
Target Sequence 
>C. ELEGANS:186106_AT
tgactcctgaaggtctttctacctctgcggaaaccgaggcgcctgaggtaacaatgatga
caacacctgcaatggagacatcgaccgtaacagaacaactatgcaaaattagtgcagcca
cgtgcccagatttggcgtcagtggtcatagacaacgtggacatgacgactgacacgggcg
gctgcattgaattatcgtgtgtacctggaaatgttccatttcttggtgcttcatttgata
acagtgaaataccaccacctactgcaggtgacgtaggtgatgattttataattatagccc
caatacctcctcaagtagttgtcggcgggctaaatggatattatggactcgtgtgtgaga
ataataagttgaaggcaacgaagtatccacttggaattaccacattttccggtagtggta
ctcacggagcagatgggtcattcagtggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACTCCTGAAGGTCTTTCTACCTC 36 571 578 Antisense
TTCTACCTCTGCGGAAACCGAGGCG 545 625 594 Antisense
AACACCTGCAATGGAGACATCGACC 52 137 639 Antisense
GACATCGACCGTAACAGAACAACTA 480 369 654 Antisense
GGCGTCAGTGGTCATAGACAACGTG 292 541 711 Antisense
GTGGACATGACGACTGACACGGGCG 120 491 733 Antisense
TATAATTATAGCCCCAATACCTCCT 337 659 864 Antisense
ACCTCCTCAAGTAGTTGTCGGCGGG 13 87 882 Antisense
ATCCACTTGGAATTACCACATTTTC 396 39 962 Antisense
ACATTTTCCGGTAGTGGTACTCACG 319 105 979 Antisense
GGAGCAGATGGGTCATTCAGTGGGA 204 519 1003 Antisense
Sequence Source Affymetrix Proprietary Database