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[186105_s_at]

Description C10G11.9 /REP_DB=WormBase Gene ID /WP=CE08088 /TR=P91026 /GB=AAB42250.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 10.1
(-2)
A 		4.8
(-3)
A 		35.9
(3)
A 		16.5
(-0.7)
A 		31
B 32.8
(-1.9)
A 		66.7
(3)
A 		24.9
(-3)
A 		33.5
(-1.8)
A 		42
C 30.6
(0.6)
A 		33
(3)
A 		27.8
(-2.2)
A 		27
(-3)
A 		6
avr 24.5
(-3) 		34.8
(3) 		29.5
(-0.1) 		25.7
(-2.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 828
1 2 3 4 5 6 range
A 21.4
(-2.9)
A 		4.2
(-3)
A 		13.5
(-2.9)
A 		111.7
(-2.2)
A 		594.7
(1.5)
P 		793.5
(3)
P 		789
B 7.1
(-3)
A 		31.8
(-2.8)
A 		38.4
(-2.8)
A 		110
(-2.2)
A 		759.2
(2.6)
P 		815.7
(3)
P 		809
C 17.4
(-2.9)
A 		26.1
(-2.9)
A 		6.9
(-3)
A 		106.7
(-2.3)
A 		832.6
(3)
P 		705.2
(2.1)
P 		826
avr 15.3
(-3) 		20.7
(-3) 		19.6
(-3) 		109.5
(-2.3) 		728.8
(2.7) 		771.5
(3) 		756
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.7
(-1.1)
A 		1.1
(-3)
A 		9.4
(3)
A 		2.4
(-2.1)
A 		8
B 10.5
(-0.4)
A 		16.5
(3)
A 		5.8
(-3)
A 		7.1
(-2.3)
A 		11
C 10.1
(3)
A 		9.5
(2.4)
A 		9.7
(2.6)
A 		4.5
(-3)
A 		6
avr 8.1
(1.7) 		9
(3) 		8.3
(2) 		4.7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 4
(-2.9)
A 		1.5
(-3)
A 		2.9
(-3)
A 		28.3
(-2.2)
A 		179.4
(2.6)
P 		193.2
(3)
P 		192
B 2.5
(-3)
A 		10.6
(-2.8)
A 		9.3
(-2.9)
A 		29.1
(-2.5)
A 		308.4
(3)
P 		304.2
(2.9)
P 		306
C 6.5
(-2.9)
A 		8
(-2.9)
A 		1.7
(-3)
A 		21.5
(-2.6)
A 		269.4
(3)
P 		236.1
(2.3)
P 		268
avr 4.3
(-3) 		6.7
(-2.9) 		4.6
(-3) 		26.3
(-2.5) 		252.4
(3) 		244.5
(2.8) 		248
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186105_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1946
Sequence Type Exemplar sequence
Representative Public ID C10G11.9 NCBI
Target Description C10G11.9 /REP_DB=WormBase Gene ID /WP=CE08088 /TR=P91026 /GB=AAB42250.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059359(11), NM_059411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059359 NCBI Caenorhabditis elegans T27A3.4 (T27A3.4) mRNA, complete cds. 11/11 None
NM_059411 NCBI Caenorhabditis elegans C10G11.9 (C10G11.9) mRNA, complete cds. 11/11 None
GENEFINDER00000041167 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6280148:6283374:-1 11/11 None
SNAP00000022766 ENSEMBL cdna:SNAP chromosome:CEL140:I:6107143:6107807:1 11/11 None
GENEFINDER00000022782 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6107143:6107807:1 11/11 None
T27A3.4 ENSEMBL cdna:known chromosome:CEL140:I:6107112:6107861:1 gene:T27A3.4 11/11 None
C10G11.9 ENSEMBL cdna:known chromosome:CEL140:I:6282710:6283403:-1 gene:C10G11.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6107142-6107807(+) 98.53 98.53
chrI:6282638-6283303(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl T27A3.4
C10G11.9
Entrez Gene 172293 Entrez gene
172325 Entrez gene
SwissProt P91026 EMBL-EBI
P91497 EMBL-EBI
WormBase CE08088 Wormbase
CE14223 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42248 Hypothetical protein C10G11.8 [Caenorhabditis elegans] ref|NP_491811.1| C10G11.8 [Caenorhabditis elegans] 0.0
blast CAE65902 Hypothetical protein CBG11069 [Caenorhabditis briggsae] 0.0
blast A44468 26S proteasome regulatory chain 4 [validated] - human 1.0E-128
blast AAB42250 Hypothetical protein C10G11.9 [Caenorhabditis elegans] ref|NP_491812.1| C10G11.9 [Caenorhabditis elegans] 3.0E-21
blast AAB42294 Hypothetical protein T27A3.4 [Caenorhabditis elegans] ref|NP_491760.1| T27A3.4 [Caenorhabditis elegans] 3.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.7E-83
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000041167 1 173-192
Sequence
Target Sequence 
>C. ELEGANS:186105_S_AT
tcaaaagggcgtttcactccgcttgccaaggcaaagagaaccgtcgtgagccgttcccgc
tccagatccagaagcgcttctcgtggagctcgtcaaagccgtagcgttggaagaccaatg
agtcgcagaaactcagtccgctcgatctcaacccacactgccaaatcgccgagtttggtt
ctcgtcatcagcggctctccatcacctcgtcgtcgtcgtccgtcaacccgccgttcgtcg
tctcgtcgctcggttgtgagaagcgtctcccgtggatcgaagagccgtcgttcgtcttct
cgtggatcggtgtatgggcgcacaggacgctctcgttcgtccaagcgttctcgctccaga
agccgcccaaggactcgctcaggatcccgttcttcatcacgctctcgttccggctcccgc
agaagctcccgccgccgctcgcgtcgtcgctcatcttcgaaggcacgtggacgtcgtgcg
tcgactgcaaagaagactcctgccaaaagacgtagccgcagcagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAAGGGCGTTTCACTCCGCTTG 636 629 58 Antisense
TTCACTCCGCTTGCCAAGGCAAAGA 536 687 70 Antisense
GCAAAGAGAACCGTCGTGAGCCGTT 302 317 88 Antisense
CTCCAGATCCAGAAGCGCTTCTCGT 308 235 117 Antisense
TCCAGAAGCGCTTCTCGTGGAGCTC 294 589 124 Antisense
TCGTGGAGCTCGTCAAAGCCGTAGC 376 603 138 Antisense
AAAGCCGTAGCGTTGGAAGACCAAT 322 117 152 Antisense
GTTGGAAGACCAATGAGTCGCAGAA 705 435 163 Antisense
TGAGTCGCAGAAACTCAGTCCGCTC 16 569 176 Antisense
GCCGAGTTTGGTTCTCGTCATCAGC 676 283 225 Antisense
GCCAAAAGACGTAGCCGCAGCAGAA 393 277 559 Antisense
Sequence Source Affymetrix Proprietary Database