[Home] | [Total List]

[186103_at]

Description Y73C8C.8 /REP_DB=WormBase Gene ID /WP=CE28271 /TR=Q9TXW5 /GB=AAC69348.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 43      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 2.8
(-3)
A 		12.8
(1.4)
A 		14.2
(2)
A 		16.5
(3)
A 		14
B 20.3
(-0.3)
A 		42
(3)
A 		10
(-1.9)
A 		3.1
(-3)
A 		39
C 44.7
(0.3)
A 		66.9
(3)
A 		17.2
(-3)
A 		24.7
(-2.1)
A 		50
avr 22.6
(-1) 		40.6
(3) 		13.8
(-3) 		14.8
(-2.8) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 3.1
(-3)
A 		6.7
(-2.5)
A 		22.6
(-0.2)
A 		9.5
(-2.1)
A 		44.7
(3)
A 		39.7
(2.3)
M 		42
B 6.4
(-2.5)
A 		8.5
(-2.2)
A 		2.2
(-3)
A 		29.6
(0.5)
A 		49.3
(3)
A 		30.7
(0.6)
A 		47
C 20.7
(-2.5)
A 		19.1
(-2.8)
A 		17.8
(-3)
A 		18.7
(-2.8)
A 		49.8
(3)
A 		33.4
(-0.1)
P 		32
avr 10.1
(-3) 		11.4
(-2.8) 		14.2
(-2.3) 		19.3
(-1.5) 		47.9
(3) 		34.6
(0.9) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 1
(-3)
A 		2.8
(1)
A 		3.7
(3)
A 		2.4
(0.1)
A 		3
B 6.5
(0.6)
A 		10.4
(3)
A 		2.3
(-2)
A 		0.7
(-3)
A 		10
C 14.8
(1.2)
A 		19.2
(3)
A 		6
(-2.3)
A 		4.2
(-3)
A 		15
avr 7.4
(0.6) 		10.8
(3) 		4
(-1.9) 		2.4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.6
(-3)
A 		2.4
(-2.2)
A 		4.9
(-1)
A 		2.4
(-2.2)
A 		13.5
(3)
A 		9.7
(1.2)
M 		13
B 2.2
(-2.5)
A 		2.8
(-2.3)
A 		0.5
(-3)
A 		7.8
(-0.8)
A 		20
(3)
A 		11.4
(0.4)
A 		20
C 7.7
(-1.1)
A 		5.8
(-2)
A 		4.5
(-2.7)
A 		3.8
(-3)
A 		16.1
(3)
A 		11.2
(0.6)
P 		12
avr 3.5
(-2.9) 		3.7
(-2.8) 		3.3
(-3) 		4.7
(-2.4) 		16.5
(3) 		10.8
(0.4) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186103_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14872
Sequence Type Exemplar sequence
Representative Public ID Y73C8C.8 NCBI
Target Description Y73C8C.8 /REP_DB=WormBase Gene ID /WP=CE28271 /TR=Q9TXW5 /GB=AAC69348.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071452(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071452 NCBI Caenorhabditis elegans Y73C8C.8 (Y73C8C.8) mRNA, complete cds. 11/11 None
SNAP00000003102 ENSEMBL cdna:SNAP chromosome:CEL140:V:3107619:3113681:-1 11/11 None
GENEFINDER00000003113 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3106527:3113954:-1 11/11 None
Y73C8C.8 ENSEMBL cdna:known chromosome:CEL140:V:3110010:3113681:-1 gene:Y73C8C.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3110009-3113681(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73C8C.8
Entrez Gene 178753 Entrez gene
SwissProt Q9TXW5 EMBL-EBI
WormBase CE28271 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69348 Hypothetical protein Y73C8C.8 [Caenorhabditis elegans] ref|NP_503853.1| Y73C8C.8 [Caenorhabditis elegans] 0.0
blast AAC04439 Hypothetical protein T22B2.1 [Caenorhabditis elegans] ref|NP_508680.1| T22B2.1 [Caenorhabditis elegans] 0.0
blast AAC69345 Hypothetical protein Y73C8C.3 [Caenorhabditis elegans] ref|NP_503854.1| Y73C8C.3 [Caenorhabditis elegans] 0.0
blast AAC69347 Hypothetical protein Y73C8C.7 [Caenorhabditis elegans] ref|NP_503852.1| Y73C8C.7 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000003113 3 1445-1467,1479-1501,1524-1546
Sequence
Target Sequence 
>C. ELEGANS:186103_AT
gaagccaactcttgttgctgaaaccattcctcaaagattcacagaagatacggaaaaagt
tcaggatattctattcgaaatgctcaaagctcaagcagttttggaagtcgaaaatccaat
gaacaaaatcaacaaaatgacctcaaaacttattcaagtttcaaagaaccgggaaaacaa
gataatttcaaaacgagaatttatttactttgaacggcaaatcagaggatacacaaagga
agtggaaaaccggatcaaaataattagatcaaatgagcaaatcagcagtgaccagattcc
ggagctccgaaactttccaactttctctgatgagttcttgaaggcctataaggatacctt
caaagaaaatgctccactcatttgtgctcaactgctcaaaactccagaatctcaaaaatc
cgatgatcttgaagataaggaatgcctggtatgcctggaagatatgatggaagagcatga
aacattgaagtgctcaaattgcaaacgacaatatcatactggctgtgctcaaaagtggtt
taaagtcaaaagaatttgccctacctgtaattctggcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCAACTCTTGTTGCTGAAACC 591 343 2232 Antisense
ACTCTTGTTGCTGAAACCATTCCTC 393 99 2239 Antisense
GTTGCTGAAACCATTCCTCAAAGAT 311 439 2245 Antisense
AAACCATTCCTCAAAGATTCACAGA 483 125 2252 Antisense
AAAAAGTTCAGGATATTCTATTCGA 177 129 2285 Antisense
TATTCTATTCGAAATGCTCAAAGCT 166 665 2298 Antisense
GAGAATTTATTTACTTTGAACGGCA 704 385 2426 Antisense
TGGAAAACCGGATCAAAATAATTAG 26 1 2474 Antisense
AAATGAGCAAATCAGCAGTGACCAG 464 119 2502 Antisense
CAAAAGAATTTGCCCTACCTGTAAT 495 189 2778 Antisense
TTGCCCTACCTGTAATTCTGGCCTT 326 703 2787 Antisense
Sequence Source Affymetrix Proprietary Database