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[186102_at]

Description Y53C12A.6 /REP_DB=WormBase Gene ID /WP=CE14892 /TR=O18208 /GB=CAB16483.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_high_8_8 > 31      6grp_highest_nonorm > 90      6grp_total > 95      4grp_total > 40      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 56.9
(-2.6)
P 		53.7
(-3)
P 		104.5
(3)
P 		90.9
(1.4)
P 		51
B 76.8
(0.7)
P 		94.4
(2.5)
P 		99.2
(3)
P 		40.7
(-3)
M 		59
C 51.4
(-1.5)
P 		45.4
(-2.4)
P 		41.6
(-3)
P 		81.7
(3)
P 		40
avr 61.7
(-3) 		64.5
(-2.2) 		81.8
(3) 		71.1
(-0.2) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 85.3
(-2.3)
P 		70.2
(-3)
P 		76.5
(-2.7)
P 		97.3
(-1.8)
P 		205.4
(3)
P 		125
(-0.6)
P 		135
B 71.2
(-2.3)
P 		61.1
(-2.9)
P 		59.1
(-3)
P 		68.9
(-2.4)
P 		164.5
(3)
P 		151.6
(2.3)
P 		105
C 35.9
(-3)
P 		41.6
(-2.7)
P 		70.9
(-1.4)
P 		133.9
(1.5)
P 		91.9
(-0.4)
P 		165.3
(3)
P 		129
avr 64.1
(-2.6) 		57.6
(-3) 		68.8
(-2.3) 		100
(-0.4) 		153.9
(3) 		147.3
(2.6) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 20.7
(0.5)
P 		11.6
(-3)
P 		27.3
(3)
P 		13.3
(-2.4)
P 		16
B 24.5
(3)
P 		23.3
(2.5)
P 		23
(2.4)
P 		8.7
(-3)
M 		16
C 17
(3)
P 		13
(-3)
P 		14.5
(-0.8)
P 		13.8
(-1.8)
P 		4
avr 20.7
(2.4) 		16
(-0.5) 		21.6
(3) 		11.9
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 15.7
(-3)
P 		25
(-1.8)
P 		16.7
(-2.9)
P 		24.7
(-1.8)
P 		62
(3)
P 		30.4
(-1.1)
P 		46
B 24.8
(-1.8)
P 		20.4
(-2.3)
P 		14.4
(-3)
P 		18.2
(-2.6)
P 		66.8
(3)
P 		56.5
(1.8)
P 		52
C 13.3
(-2.9)
P 		12.7
(-3)
P 		18.1
(-2.2)
P 		26.9
(-1)
P 		29.8
(-0.6)
P 		55.3
(3)
P 		43
avr 17.9
(-2.8) 		19.4
(-2.5) 		16.4
(-3) 		23.3
(-1.9) 		52.9
(3) 		47.4
(2.1) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186102_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2914
Sequence Type Exemplar sequence
Representative Public ID Y53C12A.6 NCBI
Target Description Y53C12A.6 /REP_DB=WormBase Gene ID /WP=CE14892 /TR=O18208 /GB=CAB16483.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063695(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063695 NCBI Caenorhabditis elegans Y53C12A.6 (Y53C12A.6) mRNA, complete cds. 11/11 None
SNAP00000043901 ENSEMBL cdna:SNAP chromosome:CEL140:II:9717423:9718036:-1 11/11 None
GENEFINDER00000043906 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9717389:9718505:-1 9/11 None
Y53C12A.6 ENSEMBL cdna:known chromosome:CEL140:II:9717423:9717863:-1 gene:Y53C12A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9717419-9717860(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53C12A.6
Entrez Gene 190201 Entrez gene
SwissProt O18208 EMBL-EBI
WormBase CE14892 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16483 Hypothetical protein Y53C12A.6 [Caenorhabditis elegans] ref|NP_496096.1| Y53C12A.6 [Caenorhabditis elegans] 2.0E-72
blast CAB16483 Hypothetical protein Y53C12A.6 [Caenorhabditis elegans] ref|NP_496096.1| Y53C12A.6 [Caenorhabditis elegans] 4.0E-56
blast CAB16483 Hypothetical protein Y53C12A.6 [Caenorhabditis elegans] ref|NP_496096.1| Y53C12A.6 [Caenorhabditis elegans] 5.0E-54
Sequence
Target Sequence 
>C. ELEGANS:186102_AT
aggagcgcaaacaagagttcttctggtacaagctggatcctcttgatttggccaaagcag
tggcaatggcttcacaaatgaacgacagaggagtcatcccgtatccaacaccaacgctca
atgatgccctcaatgaccatgctgctttgatccgcgcactgaacgattcatcgatcaaaa
agttgttcaaagaggtcagatttttttgtaccatgagaaaacgattcagcacaatccgca
ataatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGCGCAAACAAGAGTTCTTCTG 77 55 125 Antisense
GTTCTTCTGGTACAAGCTGGATCCT 147 443 141 Antisense
GCTGGATCCTCTTGATTTGGCCAAA 399 295 156 Antisense
GGCCAAAGCAGTGGCAATGGCTTCA 655 543 174 Antisense
GACAGAGGAGTCATCCCGTATCCAA 692 363 208 Antisense
CCAACACCAACGCTCAATGATGCCC 128 277 229 Antisense
CAATGATGCCCTCAATGACCATGCT 377 183 243 Antisense
TCAATGACCATGCTGCTTTGATCCG 410 633 254 Antisense
TTGATCCGCGCACTGAACGATTCAT 56 703 271 Antisense
GAGGTCAGATTTTTTTGTACCATGA 70 403 316 Antisense
ATTCAGCACAATCCGCAATAATCCA 407 11 348 Antisense
Sequence Source Affymetrix Proprietary Database