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[186101_at]

Description R02E12.5 /REP_DB=WormBase Gene ID /WP=CE04782 /TR=Q21640 /GB=AAA96183.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 37      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 61.6
(3)
A 		58.4
(2.5)
A 		58.1
(2.5)
A 		19.3
(-3)
A 		42
B 54.7
(3)
A 		34
(-0)
A 		13.6
(-3)
A 		29
(-0.8)
A 		41
C 63.1
(2.1)
P 		59.7
(1.7)
A 		13.2
(-3)
A 		72.1
(3)
A 		59
avr 59.8
(3) 		50.7
(1.3) 		28.3
(-3) 		40.1
(-0.8) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 74.8
(1.9)
A 		21.9
(-2.4)
A 		87.8
(3)
M 		72.7
(1.8)
A 		14.4
(-3)
A 		23.8
(-2.2)
A 		73
B 80.9
(3)
A 		42.8
(-0.1)
A 		65.5
(1.8)
M 		13.2
(-2.4)
A 		48.2
(0.4)
A 		6.3
(-3)
A 		75
C 63
(1.5)
P 		26.3
(-1.6)
A 		54.8
(0.8)
A 		81
(3)
A 		24.7
(-1.8)
A 		9.9
(-3)
A 		71
avr 72.9
(3) 		30.3
(-1.3) 		69.4
(2.6) 		55.6
(1.3) 		29.1
(-1.4) 		13.3
(-3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 22.4
(3)
A 		12.7
(0)
A 		15.2
(0.8)
A 		2.8
(-3)
A 		20
B 17.4
(3)
A 		8.4
(-0.8)
A 		3.1
(-3)
A 		6.2
(-1.7)
A 		14
C 20.9
(3)
P 		17.1
(1.6)
A 		4.6
(-3)
A 		12.2
(-0.2)
A 		16
avr 20.2
(3) 		12.7
(-0.4) 		7.6
(-2.8) 		7.1
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 13.8
(0.9)
A 		7.8
(-1.6)
A 		19.1
(3)
M 		18.4
(2.7)
A 		4.3
(-3)
A 		5.8
(-2.4)
A 		15
B 28.1
(3)
A 		14.2
(-0.2)
A 		15.9
(0.2)
M 		3.5
(-2.7)
A 		19.6
(1)
A 		2.4
(-3)
A 		26
C 23.3
(3)
P 		8
(-1.6)
A 		13.9
(0.2)
A 		16.3
(0.9)
A 		8
(-1.6)
A 		3.3
(-3)
A 		20
avr 21.7
(3) 		10
(-0.9) 		16.3
(1.2) 		12.7
(-0) 		10.6
(-0.7) 		3.8
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186101_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18202
Sequence Type Exemplar sequence
Representative Public ID R02E12.5 NCBI
Target Description R02E12.5 /REP_DB=WormBase Gene ID /WP=CE04782 /TR=Q21640 /GB=AAA96183.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076287(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076287 NCBI Caenorhabditis elegans R02E12.5 (R02E12.5) mRNA, complete cds. 11/11 None
GENEFINDER00000023248 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3995524:3998485:1 11/11 None
R02E12.5 ENSEMBL cdna:known chromosome:CEL140:X:3997358:3998485:1 gene:R02E12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023239 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3997358-3998428(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02E12.5
Entrez Gene 187526 Entrez gene
SwissProt Q21640 EMBL-EBI
WormBase CE30292 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96183 Hypothetical protein R02E12.5 [Caenorhabditis elegans] ref|NP_508688.2| R02E12.5 [Caenorhabditis elegans] 8.0E-34
blast AAA96183 Hypothetical protein R02E12.5 [Caenorhabditis elegans] ref|NP_508688.2| R02E12.5 [Caenorhabditis elegans] 1.0E-33
blast CAE68510 Hypothetical protein CBG14323 [Caenorhabditis briggsae] 1.0E-21
Sequence
Target Sequence 
>C. ELEGANS:186101_AT
cgcacgtcgtctaccgaagatatccgcaaaagtgttgataagactccagaaccacttccc
aaaaagccgacaccaacgaatcgcgctccagctcaagagctgcgaagtgctaacaacgga
aatattctgcaaattgctggaaagccaatcatcgaggtcgaaagtgccagtcaagccgat
ttcttccgtatgttggacgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCACGTCGTCTACCGAAGATATCC 185 255 31 Antisense
GTCGTCTACCGAAGATATCCGCAAA 227 473 36 Antisense
AAGTGTTGATAAGACTCCAGAACCA 57 159 60 Antisense
AAAAGCCGACACCAACGAATCGCGC 707 131 92 Antisense
ATCGCGCTCCAGCTCAAGAGCTGCG 27 37 110 Antisense
AGAGCTGCGAAGTGCTAACAACGGA 660 69 126 Antisense
ACGGAAATATTCTGCAAATTGCTGG 611 95 146 Antisense
GGAAAGCCAATCATCGAGGTCGAAA 120 527 169 Antisense
GAGGTCGAAAGTGCCAGTCAAGCCG 213 403 184 Antisense
TCAAGCCGATTTCTTCCGTATGTTG 620 631 201 Antisense
GATTTCTTCCGTATGTTGGACGACA 376 427 208 Antisense
Sequence Source Affymetrix Proprietary Database