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[186100_at]

Description T20H12.1 /REP_DB=WormBase Gene ID /WP=CE13868 /TR=O16618 /GB=AAB66088.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 12.3
(-3)
A 		36.8
(-1.3)
A 		41.9
(-1)
A 		99
(3)
A 		87
B 11.5
(-3)
A 		57.6
(0.7)
A 		13.6
(-2.8)
A 		85.9
(3)
A 		74
C 7.8
(-3)
A 		79.9
(0.4)
A 		46.6
(-1.1)
A 		133.3
(3)
A 		126
avr 10.5
(-3) 		58.1
(-0) 		34
(-1.5) 		106.1
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 10.3
(-2.7)
A 		8
(-3)
A 		52
(3)
A 		7.9
(-3)
A 		34.2
(0.6)
A 		8.7
(-2.9)
A 		44
B 5.7
(-3)
A 		10.9
(-1.9)
A 		35.3
(3)
A 		8.3
(-2.5)
A 		7.5
(-2.6)
A 		12.5
(-1.6)
A 		30
C 7.4
(-2.4)
A 		33.5
(3)
A 		4.4
(-3)
A 		15.7
(-0.7)
A 		9.4
(-2)
A 		9.5
(-1.9)
A 		29
avr 7.8
(-3) 		17.5
(-0.4) 		30.6
(3) 		10.6
(-2.3) 		17
(-0.6) 		10.2
(-2.4) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 4.5
(-3)
A 		8
(-0.9)
A 		11
(0.9)
A 		14.5
(3)
A 		10
B 3.7
(-2.8)
A 		14.2
(1.4)
A 		3.2
(-3)
A 		18.3
(3)
A 		15
C 2.6
(-3)
A 		23
(3)
A 		16.3
(1)
A 		22.5
(2.9)
A 		20
avr 3.6
(-3) 		15.1
(1.7) 		10.2
(-0.3) 		18.4
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.9
(-3)
A 		2.8
(-2.4)
A 		11.3
(3)
A 		2
(-2.9)
A 		10.3
(2.4)
A 		2.1
(-2.9)
A 		9
B 2
(-3)
A 		3.6
(-1.5)
A 		8.6
(3)
A 		2.2
(-2.8)
A 		3
(-2.1)
A 		4.6
(-0.6)
A 		7
C 2.7
(-1.9)
A 		10.2
(3)
A 		1.1
(-3)
A 		3.2
(-1.6)
A 		3
(-1.7)
A 		3.2
(-1.6)
A 		9
avr 2.2
(-3) 		5.5
(1.1) 		7
(3) 		2.5
(-2.6) 		5.4
(1) 		3.3
(-1.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186100_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5847
Sequence Type Exemplar sequence
Representative Public ID T20H12.1 NCBI
Target Description T20H12.1 /REP_DB=WormBase Gene ID /WP=CE13868 /TR=O16618 /GB=AAB66088.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062299
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T20H12.1 ENSEMBL cdna:known chromosome:CEL140:II:3949394:3951337:1 gene:T20H12.1 None
SNAP00000038233 ENSEMBL cdna:SNAP chromosome:CEL140:II:3948760:3951324:1 None
NM_062299 NCBI Caenorhabditis elegans T20H12.1 (T20H12.1) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038234 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3949392-3952458(+) 82.5 100.0
Public Domain and Genome References
Gene Title
Ensembl T20H12.1
Entrez Gene 188670 Entrez gene
SwissProt O16618 EMBL-EBI
WormBase CE32729 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66088 Hypothetical protein T20H12.1 [Caenorhabditis elegans] ref|NP_494700.2| T20H12.1 [Caenorhabditis elegans] 3.0E-90
blast C88116 protein T20H12.1 [imported] - Caenorhabditis elegans 3.0E-89
blast AAB66088 Hypothetical protein T20H12.1 [Caenorhabditis elegans] ref|NP_494700.2| T20H12.1 [Caenorhabditis elegans] 7.0E-9
blast C88116 protein T20H12.1 [imported] - Caenorhabditis elegans 7.0E-9
Sequence
Target Sequence 
>C. ELEGANS:186100_AT
attttttcacaagtctcaggctgccgcacataagatcatcaagctggagcctccgaacgc
cacatcgacgccgaagaagaaaaatgagccgccggaattactagtgaagagtgggaagat
cgagaacttttggaatgtcgaattgttgaagaggacgaggaaaatgggaagagagtacaa
gttcactggaatcgcggcaaagctgaacccactgaattgtcgactgaagttggagattgc
ggaggacctcgatgagaggcatttttataagacggaaacactgtgcctttttgaaattgt
tccaaaaaatgcccacaatttgtcgaaaattttcggcaattgccagtttgtcagaaattt
caaatccggcaatttgatggtttgccgtttgccgccaacccctggttcagacattgattt
ccagattttcagacactcacagcgttggtttgttcatttcccagttagatcaaaatctca
aaacctcggagatcttttcttgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTTTCACAAGTCTCAGGCTGCC 29 15 234 Antisense
GGCTGCCGCACATAAGATCATCAAG 131 541 252 Antisense
TCATCAAGCTGGAGCCTCCGAACGC 154 621 269 Antisense
AGTTCACTGGAATCGCGGCAAAGCT 483 63 413 Antisense
GCTGAACCCACTGAATTGTCGACTG 238 295 435 Antisense
AATTTGATGGTTTGCCGTTTGCCGC 271 175 604 Antisense
GCCAACCCCTGGTTCAGACATTGAT 523 277 627 Antisense
GATTTCCAGATTTTCAGACACTCAC 3 429 649 Antisense
GACACTCACAGCGTTGGTTTGTTCA 194 367 665 Antisense
GGTTTGTTCATTTCCCAGTTAGATC 197 505 680 Antisense
AAACCTCGGAGATCTTTTCTTGTTG 523 125 714 Antisense
Sequence Source Affymetrix Proprietary Database