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[186099_at]

Description Y41G9A.2 /REP_DB=WormBase Gene ID /WP=CE24270 /TR=Q9N500 /GB=AAF60548.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 15      6grp_total > 04      4grp_total > 57      6grp_high1_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 62.5
(-1.7)
A 		187.4
(2.5)
P 		200.7
(3)
P 		24.7
(-3)
A 		176
B 23.3
(-3)
A 		203.8
(3)
P 		148.1
(1.1)
P 		34
(-2.6)
A 		181
C 70.4
(-2.4)
A 		156.1
(3)
P 		155.5
(3)
P 		61.4
(-3)
A 		95
avr 52.1
(-2.5) 		182.4
(3) 		168.1
(2.4) 		40
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 196.1
(3)
P 		131.9
(0.5)
P 		111.4
(-0.3)
P 		126.3
(0.3)
M 		84.6
(-1.4)
P 		42.6
(-3)
A 		154
B 174
(3)
P 		171
(2.8)
P 		77.9
(-3)
P 		101.8
(-1.5)
P 		87
(-2.4)
P 		84.4
(-2.6)
P 		96
C 187
(3)
P 		142
(1)
P 		80.7
(-1.8)
P 		120.7
(0)
P 		70.3
(-2.3)
A 		53.9
(-3)
P 		133
avr 185.7
(3) 		148.3
(1.2) 		90
(-1.6) 		116.3
(-0.3) 		80.6
(-2) 		60.3
(-3) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 22.8
(-0.6)
A 		40.7
(1.6)
P 		52.5
(3)
P 		3.6
(-3)
A 		49
B 7.4
(-3)
A 		50.3
(3)
P 		34.3
(0.8)
P 		7.2
(-3)
A 		43
C 23.3
(-1.2)
A 		44.9
(1.7)
P 		54.2
(3)
P 		10.4
(-3)
A 		44
avr 17.8
(-1.4) 		45.3
(2.7) 		47
(3) 		7.1
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 36.1
(1.2)
P 		46.9
(3)
P 		24.3
(-0.7)
P 		32
(0.6)
M 		25.5
(-0.5)
P 		10.4
(-3)
A 		37
B 60.5
(3)
P 		56.9
(2.5)
P 		18.9
(-3)
P 		27
(-1.8)
P 		35.3
(-0.6)
P 		31.5
(-1.2)
P 		42
C 69.3
(3)
P 		43.3
(-0)
P 		20.5
(-2.7)
P 		24.3
(-2.3)
P 		22.7
(-2.5)
A 		18
(-3)
P 		51
avr 55.3
(3) 		49
(1.9) 		21.2
(-2.8) 		27.8
(-1.7) 		27.8
(-1.7) 		20
(-3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186099_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18405
Sequence Type Exemplar sequence
Representative Public ID Y41G9A.2 NCBI
Target Description Y41G9A.2 /REP_DB=WormBase Gene ID /WP=CE24270 /TR=Q9N500 /GB=AAF60548.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076109(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076109 NCBI Caenorhabditis elegans Y41G9A.2 (Y41G9A.2) mRNA, complete cds. 11/11 None
SNAP00000022735 ENSEMBL cdna:SNAP chromosome:CEL140:X:2982047:2984026:1 11/11 None
GENEFINDER00000022744 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2982047:2984026:1 11/11 None
Y41G9A.2 ENSEMBL cdna:known chromosome:CEL140:X:2982047:2984116:1 gene:Y41G9A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2982046-2984026(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41G9A.2
Entrez Gene 180584 Entrez gene
SwissProt Q9N500 EMBL-EBI
WormBase CE35801 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508510 Y41G9A.2 [Caenorhabditis elegans] gb|AAF60548.2| Hypothetical protein Y41G9A.2 [Caenorhabditis elegans] 1.0E-137
blast CAE58807 Hypothetical protein CBG02014 [Caenorhabditis briggsae] 1.0E-121
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508510.2 1 219-241
Y41G9A.2 1 219-241
SNAP00000022735 1 219-241
GENEFINDER00000022744 1 219-241
Sequence
Target Sequence 
>C. ELEGANS:186099_AT
tacggttccacgtgtgatgctcaggcagaaaacaagattgctcaatgttcggaagaacta
attagcatgggtgtttttagtgcgctgggaggaaaacaaaccaccttatcagatatgaaa
tcgcactctcaaattcattttgtccagatgtgcggggcttatcaaagattcaacaactgc
ctcggagggagctacatcaaacaagcctgctatccgcacgaaccgctaaagtctcgctat
tccgttgtcgattcagtcttggattatgtttgtggagaaggatatcaatcaatgctcaac
aactggaattgctacttgtctgttgcggaaagcagggagattgcaatgtgtgaagcaagt
ttcacacaattggcaagaaacactgaacaaatgtacaatgattattcgtcaggagccgga
gcatgctttgcacttcaatcatataccgactgcattcgtcctgcaattgaaacaacctgt
ggacttggctcttttctgacagttatccaagcagttgaacggccaattcaaatttacctt
ccattctgtacactttcttcgtccgcgatctcatttgttcaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGGTTCCACGTGTGATGCTCAGG 102 647 169 Antisense
GATTCAACAACTGCCTCGGAGGGAG 184 431 335 Antisense
CATCAAACAAGCCTGCTATCCGCAC 657 211 363 Antisense
GCACGAACCGCTAAAGTCTCGCTAT 642 313 384 Antisense
GCTATTCCGTTGTCGATTCAGTCTT 189 303 404 Antisense
GGAATTGCTACTTGTCTGTTGCGGA 621 533 473 Antisense
GGAGCATGCTTTGCACTTCAATCAT 252 521 586 Antisense
TCATATACCGACTGCATTCGTCCTG 628 619 607 Antisense
AACAACCTGTGGACTTGGCTCTTTT 125 135 639 Antisense
AATTTACCTTCCATTCTGTACACTT 41 137 699 Antisense
GTCCGCGATCTCATTTGTTCAATCA 60 477 729 Antisense
Sequence Source Affymetrix Proprietary Database