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[186097_at]

Description C44C3.10 /REP_DB=WormBase Gene ID /WP=CE25815 /TR=Q9GS05 /GB=AAG23990.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 18      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 6.5
(-3)
A 		44.9
(1.4)
M 		24.1
(-1)
A 		59.4
(3)
A 		53
B 1.4
(-3)
A 		39.5
(3)
A 		18.2
(-0.4)
A 		36.9
(2.6)
M 		38
C 33.1
(-1.5)
A 		8.6
(-3)
A 		25.7
(-2)
A 		107.2
(3)
P 		99
avr 13.7
(-3) 		31
(-1.1) 		22.7
(-2) 		67.8
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 18.6
(0.3)
A 		22.2
(1)
A 		24.4
(1.5)
A 		1.7
(-3)
A 		32.1
(3)
A 		28.5
(2.3)
A 		30
B 9.3
(-2.2)
A 		16
(-1.2)
A 		47.1
(3)
M 		3.1
(-3)
A 		16
(-1.2)
A 		29.3
(0.6)
A 		44
C 9
(-2)
A 		43.4
(3)
P 		25.2
(0.4)
A 		6.9
(-2.3)
A 		2.1
(-3)
A 		26.9
(0.6)
A 		41
avr 12.3
(-1.2) 		27.2
(1.9) 		32.2
(3) 		3.9
(-3) 		16.7
(-0.3) 		28.2
(2.2) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.4
(-3)
A 		9.7
(3)
M 		6.3
(0.2)
A 		8.7
(2.2)
A 		7
B 0.4
(-3)
A 		9.7
(3)
A 		4.2
(-0.5)
A 		7.9
(1.8)
M 		9
C 11
(0.3)
A 		2.5
(-3)
A 		8.9
(-0.5)
A 		18.1
(3)
P 		16
avr 4.6
(-3) 		7.3
(-0.7) 		6.5
(-1.4) 		11.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.4
(-1.1)
A 		7.9
(1.8)
A 		5.3
(0.2)
A 		0.4
(-3)
A 		9.7
(3)
A 		6.9
(1.2)
A 		9
B 3.2
(-1.6)
A 		5.3
(-0.5)
A 		11.4
(3)
M 		0.8
(-3)
A 		6.5
(0.2)
A 		10.9
(2.7)
A 		11
C 3.3
(-1.8)
A 		13.2
(3)
P 		6.4
(-0.3)
A 		1.4
(-2.7)
A 		0.7
(-3)
A 		9
(1)
A 		13
avr 3.3
(-1.2) 		8.8
(2.9) 		7.7
(2.1) 		0.9
(-3) 		5.6
(0.5) 		8.9
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15913
Sequence Type Exemplar sequence
Representative Public ID C44C3.10 NCBI
Target Description C44C3.10 /REP_DB=WormBase Gene ID /WP=CE25815 /TR=Q9GS05 /GB=AAG23990.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C44C3.10 ENSEMBL cdna:pseudogene chromosome:CEL140:V:2965249:2966529:-1 gene:C44C3.10 None
GENEFINDER00000011852 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2961459:2966529:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2965033-2965995(-) 100.0 100.0
Public Domain and Genome References
Ensembl C44C3.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T25624 hypothetical protein C44C3.3 - Caenorhabditis elegans 0.0
blast T33244 hypothetical protein H27D07.4 - Caenorhabditis elegans 0.0
blast AAN73865 Serpentine receptor, class w protein 138 [Caenorhabditis elegans] ref|NP_503806.2| Serpentine Receptor, class W family member (srw-138) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011852 19 37-59,66-85,95-117,149-171,211-233,257-279,355-377,402-424,434-456,477-496,534-565,582-604,624-646,684-706,716-735,805-827,869-891,918-940,955-977
Sequence
Target Sequence 
>C. ELEGANS:186097_AT
aattccatgtatattgctaccgattgtaactttattactggttttgaacttatggaaaac
cgctaaaaaaagaacaaataccttatctgtaagtaggaacaatagttcgcgaagcagaac
tggattagttttctgtgtaactattatgtttttcattgttgaattaccatatggtttgag
catggggtttgtctggtcgaatttcgatgaaattgccatgcaacaactattgactcacat
tggattctttttctcgatattaataactttgaacacttggactcatctttttgtgtgtct
catcatatcatctcgatacaggaatacagcaatttatgttttttcatttggatgtttcgg
attggttcagctgatccgctcaacccaaatcagtgtggtaatatttgaccgtatcaatta
tttggggaatttgaatgaatttgaaaaaatcacgcattttttccatttattaaaagtttc
tgatcaacttccgtttctcattcagcaggacaatgttttggaaaattatgaaaaatttta
tcaggcattcaaaaaaatatcgggaattttcgacaccattaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCCATGTATATTGCTACCGATT 640 177 216 Antisense
AGCATGGGGTTTGTCTGGTCGAATT 383 67 394 Antisense
GCCATGCAACAACTATTGACTCACA 349 279 430 Antisense
GACTCACATTGGATTCTTTTTCTCG 589 373 447 Antisense
AACTTTGAACACTTGGACTCATCTT 559 139 480 Antisense
ACTCATCTTTTTGTGTGTCTCATCA 278 101 496 Antisense
GGATGTTTCGGATTGGTTCAGCTGA 181 515 565 Antisense
GCTCAACCCAAATCAGTGTGGTAAT 531 301 593 Antisense
ATCACGCATTTTTTCCATTTATTAA 277 29 664 Antisense
AACTTCCGTTTCTCATTCAGCAGGA 191 139 701 Antisense
TATCGGGAATTTTCGACACCATTAA 595 657 773 Antisense
Sequence Source Affymetrix Proprietary Database