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[186096_at]

Description C41G11.1 /REP_DB=WormBase Gene ID /WP=CE06946 /TR=Q18561 /GB=AAA85743.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 91      4grp_high_8_8 > 15      6grp_total > 93      4grp_total > 01      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 59.8
(-1.9)
P 		70.9
(2.8)
P 		57.1
(-3)
A 		71.5
(3)
A 		14
B 59.9
(-2.3)
M 		59.9
(-2.3)
A 		46.4
(-3)
P 		168.6
(3)
P 		122
C 88.2
(-1.3)
M 		70.6
(-3)
P 		114.4
(1.3)
P 		131.7
(3)
P 		61
avr 69.3
(-2.8) 		67.1
(-3) 		72.6
(-2.4) 		123.9
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 133
(0.3)
P 		120.1
(-0.5)
P 		82.2
(-3)
P 		94.6
(-2.2)
P 		175
(3)
P 		111.5
(-1.1)
P 		93
B 86
(-2.4)
P 		119.3
(-1)
P 		107.1
(-1.5)
P 		71.3
(-3)
A 		213.8
(3)
P 		108.5
(-1.4)
P 		143
C 85
(-3)
A 		116.6
(-1.5)
P 		96.6
(-2.4)
P 		140.6
(-0.3)
P 		208.6
(3)
P 		111.5
(-1.7)
P 		124
avr 101.3
(-2.7) 		118.7
(-1.6) 		95.3
(-3) 		102.2
(-2.6) 		199.1
(3) 		110.5
(-2.1) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 21.8
(3)
P 		15.4
(-0.4)
P 		14.9
(-0.7)
A 		10.5
(-3)
A 		11
B 19.1
(-1)
M 		14.8
(-2)
A 		10.7
(-3)
P 		35.9
(3)
P 		25
C 29.2
(-0.3)
M 		20.3
(-3)
P 		39.9
(3)
P 		22.2
(-2.4)
P 		20
avr 23.4
(3) 		16.8
(-3) 		21.8
(1.5) 		22.9
(2.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 24.5
(-1.9)
P 		42.7
(1.3)
P 		17.9
(-3)
P 		24
(-2)
P 		52.8
(3)
P 		27.2
(-1.4)
P 		35
B 29.9
(-2)
P 		39.7
(-1.2)
P 		26
(-2.4)
P 		18.9
(-3)
A 		86.8
(3)
P 		40.5
(-1.1)
P 		68
C 31.5
(-2)
A 		35.6
(-1.5)
P 		24.6
(-3)
P 		28.3
(-2.5)
P 		67.5
(3)
P 		37.3
(-1.2)
P 		43
avr 28.6
(-2.2) 		39.3
(-0.9) 		22.8
(-3) 		23.7
(-2.9) 		69
(3) 		35
(-1.4) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186096_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16856
Sequence Type Exemplar sequence
Representative Public ID C41G11.1 NCBI
Target Description C41G11.1 /REP_DB=WormBase Gene ID /WP=CE06946 /TR=Q18561 /GB=AAA85743.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076561(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076561 NCBI Caenorhabditis elegans C41G11.1 (C41G11.1) mRNA, complete cds. 11/11 A 
SNAP00000015674 ENSEMBL cdna:SNAP chromosome:CEL140:X:5717566:5720146:-1 10/11 None
GENEFINDER00000015680 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5718272:5719428:-1 11/11 None
C41G11.1 ENSEMBL cdna:known chromosome:CEL140:X:5717559:5720193:-1 gene:C41G11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5718514-5720146(-) 100.0 100.0
Public Domain and Genome References
Ensembl C41G11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508962 C41G11.1 [Caenorhabditis elegans] 0.0
blast AAZ86797 Hypothetical protein C41G11.1a [Caenorhabditis elegans] 0.0
blast AAZ86798 Hypothetical protein C41G11.1b [Caenorhabditis elegans] 0.0
blast AAZ86798 Hypothetical protein C41G11.1b [Caenorhabditis elegans] 1.0E-180
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 5.4E-5
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 4.8E-6
Sequence
Target Sequence 
>C. ELEGANS:186096_AT
gaacttgaattcctaccaggggttgaagttaatgaaacagtgcggcagggtaaggaatca
actaccacgttggagagcaggtttgcaaatcgtgtgcagcgacaagctcttgatgcatta
attgggagtatggactacaagccggcagcattgattattaatggcgatttgactgatttt
gggcatcttcatcagttacacgagtttcggaaagtctggtacgacaattttcctattcca
ttactgttgggattagggaatcatgattacgacaacaatgtcaacgactgtgttcttaac
ttttgtgcgcatacaatgctctcatggtataccgactatgtgaaaaaccattcgattgtt
gctgacattacgcgaaagccggtaaacatggatgttgagtacactggaagtttggcttac
actgaaagagtttgctccaaaaacggaaaaatgtgtgcttttgtaattcaactcaataac
gccattgactacaatgtgacagtatcttccctgtttgtcaactggaacttggttccaccg
atcgaatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTGAATTCCTACCAGGGGTTG 166 349 265 Antisense
AATCGTGTGCAGCGACAAGCTCTTG 391 169 352 Antisense
GGACTACAAGCCGGCAGCATTGATT 287 525 396 Antisense
TGGCGATTTGACTGATTTTGGGCAT 358 545 426 Antisense
TGGGCATCTTCATCAGTTACACGAG 690 553 444 Antisense
GGTACGACAATTTTCCTATTCCATT 141 505 482 Antisense
GTGTTCTTAACTTTTGTGCGCATAC 441 485 554 Antisense
ACAATGCTCTCATGGTATACCGACT 696 113 577 Antisense
AAACCATTCGATTGTTGCTGACATT 668 125 609 Antisense
GACAGTATCTTCCCTGTTTGTCAAC 517 369 762 Antisense
GAACTTGGTTCCACCGATCGAATAT 88 351 789 Antisense
Sequence Source Affymetrix Proprietary Database