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[186095_at] 7TM chemoreceptor, sre family

Description C07D10.3 /REP_DB=WormBase Gene ID /WP=CE01150 /TR=Q17781 /GB=AAK31396.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 23      4grp_high_8_8 > 20      6grp_total > 03      4grp_total > 21      6grp_cgc > 51      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 58.9
(-0.7)
P 		83
(1.2)
P 		30.5
(-3)
A 		105
(3)
P 		75
B 80.4
(3)
P 		43
(-0.8)
A 		21.9
(-3)
A 		77.1
(2.7)
P 		59
C 86.9
(0.3)
P 		25.6
(-3)
A 		43.9
(-2)
P 		137.2
(3)
P 		112
avr 75.4
(0.5) 		50.5
(-1.5) 		32.1
(-3) 		106.4
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 75.5
(2.3)
P 		57
(0.9)
P 		84
(3)
P 		58.5
(1)
P 		73.7
(2.2)
P 		7.7
(-3)
A 		76
B 90.3
(3)
P 		89.3
(2.9)
P 		69.3
(0.9)
P 		46.7
(-1.4)
P 		84.4
(2.4)
P 		31.4
(-3)
A 		59
C 50.6
(-2)
P 		119.5
(3)
P 		43.3
(-2.5)
P 		97.4
(1.4)
P 		48.2
(-2.1)
P 		36.2
(-3)
P 		83
avr 72.1
(1.4) 		88.6
(3) 		65.5
(0.8) 		67.5
(1) 		68.8
(1.1) 		25.1
(-3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 21.4
(3)
P 		18
(1.5)
P 		8
(-3)
A 		15.4
(0.3)
P 		13
B 25.6
(3)
P 		10.6
(-1.4)
A 		5.1
(-3)
A 		16.4
(0.3)
P 		21
C 28.8
(3)
P 		7.4
(-3)
A 		15.3
(-0.8)
P 		23.1
(1.4)
P 		21
avr 25.3
(3) 		12
(-2.1) 		9.5
(-3) 		18.3
(0.3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 13.9
(0.5)
P 		20.3
(2.4)
P 		18.3
(1.8)
P 		14.8
(0.8)
P 		22.2
(3)
P 		1.9
(-3)
A 		20
B 31.4
(2.2)
P 		29.7
(1.8)
P 		16.8
(-1.6)
P 		12.4
(-2.8)
P 		34.3
(3)
P 		11.7
(-3)
A 		23
C 18.7
(-1.2)
P 		36.5
(3)
P 		11
(-3)
P 		19.6
(-1)
P 		15.6
(-1.9)
P 		12.1
(-2.7)
P 		26
avr 21.3
(0.8) 		28.8
(3) 		15.4
(-1) 		15.6
(-0.9) 		24
(1.6) 		8.6
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5924
Sequence Type Exemplar sequence
Representative Public ID C07D10.3 NCBI
Target Description C07D10.3 /REP_DB=WormBase Gene ID /WP=CE01150 /TR=Q17781 /GB=AAK31396.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063147(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063147 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-3) (sre-3) mRNA, complete cds. 11/11 None
SNAP00000000399 ENSEMBL cdna:SNAP chromosome:CEL140:II:7387670:7388945:1 11/11 None
GENEFINDER00000000405 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7386893:7388945:1 11/11 None
C07D10.3 ENSEMBL cdna:known chromosome:CEL140:II:7387693:7388945:1 gene:C07D10.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7387666-7388942(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sre family
Gene Symbol sre-3
Ensembl C07D10.3
Entrez Gene 182367 Entrez gene
SwissProt Q17781 EMBL-EBI
WormBase CE38144 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31396 Serpentine receptor, class e (epsilon) protein 3 [Caenorhabditis elegans] ref|NP_495548.2| Serpentine Receptor, class E (epsilon) family member (sre-3) [Caenorhabditis elegans] 1.0E-173
blast AAK31396 Serpentine receptor, class e (epsilon) protein 3 [Caenorhabditis elegans] ref|NP_495548.2| Serpentine Receptor, class E (epsilon) family member (sre-3) [Caenorhabditis elegans] 1.0E-163
blast CAE67609 Hypothetical protein CBG13154 [Caenorhabditis briggsae] 1.0E-128
blast CAE67609 Hypothetical protein CBG13154 [Caenorhabditis briggsae] 1.0E-127
blast AAK31396 Serpentine receptor, class e (epsilon) protein 3 [Caenorhabditis elegans] ref|NP_495548.2| Serpentine Receptor, class E (epsilon) family member (sre-3) [Caenorhabditis elegans] 2.0E-90
blast AAK31396 Serpentine receptor, class e (epsilon) protein 3 [Caenorhabditis elegans] ref|NP_495548.2| Serpentine Receptor, class E (epsilon) family member (sre-3) [Caenorhabditis elegans] 5.0E-82
blast CAE67609 Hypothetical protein CBG13154 [Caenorhabditis briggsae] 2.0E-66
blast CAE67609 Hypothetical protein CBG13154 [Caenorhabditis briggsae] 1.0E-60
blast CAB01220 Hypothetical protein K02E11.2 [Caenorhabditis elegans] ref|NP_506522.1| Serpentine Receptor, class E (epsilon) family member (sre-7) [Caenorhabditis elegans] 3.0E-23
blast AAC24276 Serpentine receptor, class e (epsilon) protein 9 [Caenorhabditis elegans] 3.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 7.8E-20
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 4.5E-34
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 4.5E-34
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 5.2E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495548.2 6 12-31,72-94,115-137,141-163,205-222,237-259
C07D10.3 2 52-69,84-106
SNAP00000000399 4 7-29,33-55,96-113,128-150
GENEFINDER00000000405 4 108-130,134-156,198-215,230-252
Sequence
Target Sequence 
>C. ELEGANS:186095_AT
aacggagtcgatattacattggcatatttctgctttcagcatctgctggaagtggtttca
tcctttcttatctataccataactgaaagtacgttgatatatcatacaattgcactcgta
tttaatatgacattctcaataatactagttattgtggaaaaatacaactataaacgactt
cgggagagttcgaatctaaggaaaagcaaacgagaatactcattggcagaaagatttcaa
atttctgaaaatattagagtttgtgagcttatgaaaactattattaatgttgtttcaata
ttcaatcttttatcaacagtttctgcatcattggacaatttcaacttctcacaaactttc
ttgaatgtggctgctacgttattcaacttctgtgttctaatatacggaacattggtgttt
tctttattttattacctaataccacagtttcgatcggctctcaaagatgttttcatgaaa
atgaaaattctcaatgcagtagcatcgtttccagatcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGAGTCGATATTACATTGGCAT 13 143 19 Antisense
GCATATTTCTGCTTTCAGCATCTGC 312 309 40 Antisense
TGCTGGAAGTGGTTTCATCCTTTCT 489 583 62 Antisense
TTTCATCCTTTCTTATCTATACCAT 128 673 74 Antisense
AACAGTTTCTGCATCATTGGACAAT 359 137 333 Antisense
GGACAATTTCAACTTCTCACAAACT 175 527 351 Antisense
AACTTTCTTGAATGTGGCTGCTACG 230 139 372 Antisense
GGCTGCTACGTTATTCAACTTCTGT 214 539 387 Antisense
TAATACCACAGTTTCGATCGGCTCT 416 635 455 Antisense
GATCGGCTCTCAAAGATGTTTTCAT 263 419 470 Antisense
TGCAGTAGCATCGTTTCCAGATCTA 705 577 513 Antisense
Sequence Source Affymetrix Proprietary Database