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[186094_at]

Description Y73F8A.20 /REP_DB=WormBase Gene ID /WP=CE22992 /TR=Q9NA52 /GB=CAB60548.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 59.7
(-3)
A 		240.2
(3)
A 		95.3
(-1.8)
A 		131
(-0.6)
A 		181
B 120.4
(1.4)
A 		143.6
(3)
A 		54.9
(-3)
A 		104.5
(0.4)
A 		89
C 120.6
(-2)
A 		119
(-2.1)
A 		103.8
(-3)
A 		208.9
(3)
A 		105
avr 100.2
(-1.9) 		167.6
(3) 		84.7
(-3) 		148.1
(1.6) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 100.2
(-0.6)
A 		57.4
(-2.1)
A 		29.1
(-3)
A 		68.7
(-1.7)
A 		118.6
(-0)
A 		209.4
(3)
P 		180
B 80.6
(-3)
A 		93.7
(-2)
A 		88
(-2.4)
A 		156.8
(3)
A 		124
(0.4)
A 		150.7
(2.5)
P 		76
C 18.8
(-3)
A 		121.6
(0.9)
A 		84.1
(-0.5)
A 		129.8
(1.2)
A 		103.1
(0.2)
A 		176.8
(3)
P 		158
avr 66.5
(-3) 		90.9
(-1.7) 		67.1
(-3) 		118.4
(-0.2) 		115.2
(-0.4) 		179
(3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 21.7
(-2.5)
A 		52.1
(3)
A 		24.9
(-2)
A 		19.2
(-3)
A 		33
B 38.4
(3)
A 		35.5
(2.3)
A 		12.7
(-3)
A 		22.3
(-0.8)
A 		26
C 39.9
(3)
A 		34.2
(-3)
A 		36.2
(-0.9)
A 		35.2
(-1.9)
A 		6
avr 33.3
(0.3) 		40.6
(3) 		24.6
(-3) 		25.6
(-2.6) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 18.5
(-1.4)
A 		20.4
(-1.1)
A 		6.3
(-3)
A 		17.4
(-1.5)
A 		35.8
(1)
A 		51
(3)
P 		45
B 28
(-1.9)
A 		31.2
(-1.3)
A 		21.4
(-3)
A 		41.5
(0.5)
A 		50.4
(2)
A 		56.2
(3)
P 		35
C 7
(-3)
A 		37.1
(0.5)
A 		21.4
(-1.3)
A 		26.1
(-0.8)
A 		33.4
(0)
A 		59.2
(3)
P 		52
avr 17.8
(-2.8) 		29.6
(-1) 		16.4
(-3) 		28.3
(-1.2) 		39.9
(0.6) 		55.5
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186094_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9474
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.20 NCBI
Target Description Y73F8A.20 /REP_DB=WormBase Gene ID /WP=CE22992 /TR=Q9NA52 /GB=CAB60548.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070454 NCBI Caenorhabditis elegans Y73F8A.20 (Y73F8A.20) mRNA, complete cds. 11/11 None
SNAP00000030823 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15379263:15381619:1 11/11 None
GENEFINDER00000030908 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15378465:15381619:1 11/11 None
Y73F8A.20 ENSEMBL cdna:known chromosome:CEL140:IV:15378465:15381648:1 gene:Y73F8A.20 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15378470-15381625(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73F8A.20
Entrez Gene 178430 Entrez gene
SwissProt Q9NA52 EMBL-EBI
WormBase CE22992 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60548 Hypothetical protein Y73F8A.20 [Caenorhabditis elegans] ref|NP_502855.1| Y73F8A.20 [Caenorhabditis elegans] 0.0
blast CAE68174 Hypothetical protein CBG13833 [Caenorhabditis briggsae] 1.0E-169
blast CAB16507 Hypothetical protein Y57G11C.5 [Caenorhabditis elegans] ref|NP_502780.2| Y57G11C.5 [Caenorhabditis elegans] 1.0E-150
Sequence
Target Sequence 
>C. ELEGANS:186094_AT
atggcttcattgtggcactgggctagtttgaaggttggaagttcggggattagtgcgaat
gtgaagaagaatggagagaaatcgcagacgacgctccacaaaaccttccacgatcgtatc
tccactgactctctactggagaaacataaatcctattctggtcggattgattccccattt
tcctacattgtgatggttcatggcattccaatattcactggatcttattttggaagccca
ccgccaaagtcttcacaggtttttattaatgcaccggagagaatccgccatcgccgtacc
atcatcaccaaaaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTTCATTGTGGCACTGGGCTA 240 51 1021 Antisense
AGAGAAATCGCAGACGACGCTCCAC 568 69 1095 Antisense
ACAAAACCTTCCACGATCGTATCTC 51 111 1118 Antisense
TATCTCCACTGACTCTCTACTGGAG 129 659 1137 Antisense
ATTCTGGTCGGATTGATTCCCCATT 212 9 1175 Antisense
ATTCCCCATTTTCCTACATTGTGAT 302 9 1190 Antisense
GGTTCATGGCATTCCAATATTCACT 484 507 1215 Antisense
GGATCTTATTTTGGAAGCCCACCGC 70 509 1240 Antisense
CCACCGCCAAAGTCTTCACAGGTTT 497 273 1258 Antisense
TGCACCGGAGAGAATCCGCCATCGC 677 577 1290 Antisense
GCCGTACCATCATCACCAAAAAGAG 375 283 1313 Antisense
Sequence Source Affymetrix Proprietary Database