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[186093_at]

Description Y25C1A.1 /REP_DB=WormBase Gene ID /WP=CE21468 /TR=Q9TYL0 /GB=AAD12835.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 52      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 77
(3)
A 		66.9
(2)
A 		47.1
(0.1)
A 		16.1
(-3)
A 		61
B 35.4
(-3)
A 		79.8
(3)
A 		37.7
(-2.7)
A 		37.8
(-2.7)
A 		44
C 44.4
(1.7)
A 		51.3
(3)
A 		47.1
(2.2)
A 		20.1
(-3)
A 		31
avr 52.3
(1) 		66
(3) 		44
(-0.2) 		24.7
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 43
(-2.7)
A 		57.2
(-2.3)
A 		31.2
(-3)
A 		62.6
(-2.2)
A 		161.3
(0.5)
P 		255
(3)
P 		224
B 45.5
(-3)
A 		84.5
(-1.7)
A 		46.8
(-3)
A 		57.6
(-2.6)
A 		189.6
(1.7)
P 		230
(3)
P 		185
C 21
(-3)
A 		63
(-2)
A 		79.8
(-1.6)
A 		77.9
(-1.6)
A 		158.4
(0.3)
P 		270.9
(3)
P 		250
avr 36.5
(-3) 		68.2
(-2.1) 		52.6
(-2.6) 		66
(-2.2) 		169.8
(0.7) 		252
(3) 		216
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 28
(3)
A 		14.5
(-0.2)
A 		12.3
(-0.7)
A 		2.4
(-3)
A 		26
B 11.3
(-1.3)
A 		19.7
(3)
A 		8.7
(-2.7)
A 		8.1
(-3)
A 		12
C 14.7
(2.2)
A 		14.7
(2.2)
A 		16.4
(3)
A 		3.4
(-3)
A 		13
avr 18
(3) 		16.3
(2.2) 		12.5
(0.5) 		4.6
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 7.9
(-2.9)
A 		20.3
(-1.5)
A 		6.8
(-3)
A 		15.9
(-2)
A 		48.7
(1.5)
P 		62.1
(3)
P 		55
B 15.8
(-2.6)
A 		28.1
(-1.7)
A 		11.4
(-3)
A 		15.3
(-2.7)
A 		77
(2.3)
P 		85.8
(3)
P 		74
C 7.8
(-3)
A 		19.2
(-2.2)
A 		20.3
(-2.1)
A 		15.7
(-2.4)
A 		51.2
(0.1)
P 		90.7
(3)
P 		83
avr 10.5
(-3) 		22.5
(-2) 		12.8
(-2.8) 		15.6
(-2.6) 		59
(1.2) 		79.5
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186093_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5508
Sequence Type Exemplar sequence
Representative Public ID Y25C1A.1 NCBI
Target Description Y25C1A.1 /REP_DB=WormBase Gene ID /WP=CE21468 /TR=Q9TYL0 /GB=AAD12835.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062049(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062049 NCBI Caenorhabditis elegans Y25C1A.1 (Y25C1A.1) mRNA, complete cds. 11/11 None
Y25C1A.1 ENSEMBL cdna:known chromosome:CEL140:II:3114250:3116744:1 gene:Y25C1A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3114283-3116708(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y25C1A.1
Entrez Gene 173658 Entrez gene
SwissProt Q9TYL0 EMBL-EBI
WormBase CE21468 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494450 Y25C1A.1 [Caenorhabditis elegans] gb|AAD12835.1| Hypothetical protein Y25C1A.1 [Caenorhabditis elegans] 0.0
blast AAC48075 Hypothetical protein R08C7.6 [Caenorhabditis elegans] ref|NP_500560.2| R08C7.6 [Caenorhabditis elegans] 1.0E-143
blast AAC24390 Hypothetical protein F47C12.4 [Caenorhabditis elegans] ref|NP_500450.1| F47C12.4 [Caenorhabditis elegans] 1.0E-107
Sequence
Target Sequence 
>C. ELEGANS:186093_AT
ggagcagcttttgtgccaatgtctgactcgcagacggcgcccgtgtggtgcaagtttggg
aagaggatgaactacaagatcatcgctcccgaaggatggacaccgtacgtgcgatcgaat
ggggaggttgttgctcacaagatttttatggaagcagcatcgtatgatcaagctctgcat
tggtgccgcaatgagaacgcaaaactcggaggattcaatgatcggaaagagtttgaagct
attgcagcactgattactgtccaccaaacgaaccgatactaccgactcggagcccatcaa
cgtgacgagtgtgacggtgtatctggttataccggcattgaaggcggtacatgttatcgt
gatcgaatcttcggatggattgacaacgtggcgagtgaaaacattgacgaaagtctttgg
ggagatgacgagccggacggaggaaggagaagatcagcactcggttgttgggggtccaat
tgcgttcagaatactcttgttttcagtcattttgtgaacagccatactgacggtattcca
cgtattactgattcattccatgacgacaggctgccatatgtttgcacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCAGCTTTTGTGCCAATGTCTG 187 521 1132 Antisense
TGAACTACAAGATCATCGCTCCCGA 691 573 1199 Antisense
TCGCTCCCGAAGGATGGACACCGTA 603 591 1214 Antisense
GGACACCGTACGTGCGATCGAATGG 526 525 1229 Antisense
TGATCAAGCTCTGCATTGGTGCCGC 527 565 1296 Antisense
TTGCAGCACTGATTACTGTCCACCA 37 703 1373 Antisense
GAACCGATACTACCGACTCGGAGCC 270 345 1401 Antisense
GGAGCCCATCAACGTGACGAGTGTG 486 521 1420 Antisense
AGAAGATCAGCACTCGGTTGTTGGG 697 73 1579 Antisense
GGGTCCAATTGCGTTCAGAATACTC 559 497 1603 Antisense
CGACAGGCTGCCATATGTTTGCACG 487 251 1695 Antisense
Sequence Source Affymetrix Proprietary Database