[Home] | [Total List]

[186092_s_at]

Description Y66H1A.5 /REP_DB=WormBase Gene ID /WP=CE22756 /TR=Q9TYK0 /GB=AAD12854.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 73      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 55      6grp_total > 64      4grp_total > 13      6grp_high1_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1008
1 2 3 4 range
A 1667.6
(3)
P 		1173.3
(-3)
P 		1277.5
(-1.7)
P 		1469.7
(0.6)
P 		494
B 1358.6
(-1.1)
P 		1185.5
(-3)
P 		1255.6
(-2.2)
P 		1741.6
(3)
P 		556
C 1516.5
(-0.9)
P 		1269.6
(-2.3)
P 		1160.4
(-3)
P 		2168.3
(3)
P 		1008
avr 1514.2
(0.1) 		1209.5
(-3) 		1231.2
(-2.8) 		1793.2
(3) 		584

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 883
1 2 3 4 5 6 range
A 1384.7
(-1.7)
P 		1323.6
(-2.2)
P 		1858.8
(2.1)
P 		1975.3
(3)
P 		1222.9
(-3)
P 		1674.6
(0.6)
P 		752
B 1092
(-3)
P 		1443.4
(-0.6)
P 		1968.2
(3)
P 		1381.4
(-1)
P 		1652.9
(0.8)
P 		1506.6
(-0.2)
P 		876
C 1173.4
(-3)
P 		1339.8
(-1.5)
P 		1824.2
(3)
P 		1737.3
(2.2)
P 		1476.8
(-0.2)
P 		1701.5
(1.9)
P 		651
avr 1216.7
(-3) 		1368.9
(-1.6) 		1883.7
(3) 		1698
(1.3) 		1450.9
(-0.9) 		1627.6
(0.7) 		667
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 392
1 2 3 4 range
A 607.2
(3)
P 		254.7
(-2.4)
P 		334
(-1.2)
P 		215.1
(-3)
P 		392
B 433.2
(3)
P 		292.8
(-2.9)
P 		291
(-3)
P 		371.1
(0.4)
P 		142
C 502
(3)
P 		365
(-3)
P 		404.4
(-1.3)
P 		365.6
(-3)
P 		137
avr 514.1
(3) 		304.2
(-3) 		343.1
(-1.9) 		317.3
(-2.6) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 255.3
(-3)
P 		470.7
(2.3)
P 		404.8
(0.7)
P 		501
(3)
P 		369
(-0.2)
P 		407.7
(0.7)
P 		246
B 380
(-2.7)
P 		480.4
(-0.8)
P 		477.9
(-0.8)
P 		365.9
(-3)
P 		671.6
(3)
P 		561.8
(0.8)
P 		306
C 434.9
(-0.7)
P 		408.8
(-1.4)
P 		464.3
(0.1)
P 		349.4
(-3)
P 		477.9
(0.5)
P 		569.6
(3)
P 		220
avr 356.7
(-3) 		453.3
(0.7) 		449
(0.5) 		405.4
(-1.1) 		506.2
(2.7) 		513
(3) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186092_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10762
Sequence Type Exemplar sequence
Representative Public ID Y66H1A.5 NCBI
Target Description Y66H1A.5 /REP_DB=WormBase Gene ID /WP=CE22756 /TR=Q9TYK0 /GB=AAD12854.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067527 NCBI Caenorhabditis elegans Y66H1A.5 (Y66H1A.5) mRNA, complete cds. 11/11 None
SNAP00000007350 ENSEMBL cdna:SNAP chromosome:CEL140:IV:428251:429008:-1 11/11 None
GENEFINDER00000007356 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:428251:429008:-1 11/11 None
Y66H1A.5 ENSEMBL cdna:known chromosome:CEL140:IV:428232:429030:-1 gene:Y66H1A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:428250-429008(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y66H1A.5
Entrez Gene 176871 Entrez gene
SwissProt Q9TYK0 EMBL-EBI
WormBase CE22756 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12854 Hypothetical protein Y66H1A.5 [Caenorhabditis elegans] ref|NP_499928.1| Y66H1A.5 [Caenorhabditis elegans] 1.0E-114
blast CAE67942 Hypothetical protein CBG13542 [Caenorhabditis briggsae] 3.0E-62
Sequence
Target Sequence 
>C. ELEGANS:186092_S_AT
ttattcgtgattgttgtcgcccaagcgggtcccgcagcgaattcggaaaaccacgttaat
cacgtggagcagctgaagctacaatgtgccgcatgtcaattcttgggattggcggtcgct
gaaaaaaatgtaaaagttccaagtgacaatgcagtggctcattgtctgaaattcgaagga
tgtgcagtcaagatgagtgattgtgagatcattttcacgttacattcggaaatccagaaa
acgcctgaaaattttgaaaaatcctggaatgcgatctccactgcagttgagaaatgttct
agcaacttcaaagccatggtgatcagtgaagatgttagcaatactcaatgcacattatgc
ttcttggtttacgatgttctcaagtatataaactataacattcttgagaatccaatgttg
gcaaccgtaaaggcagcgcttggtgaggcatgccccctttttaatgatgacctttgtcaa
gcgctcttccaaccggacaccttcggagccattattcgaggtcttcaggactctcttggt
ggattctatgacctcattgctgtgcagggattcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTCGTGATTGTTGTCGCCCAAG 231 679 46 Antisense
ATGTGCCGCATGTCAATTCTTGGGA 582 49 129 Antisense
ATTCTTGGGATTGGCGGTCGCTGAA 657 11 144 Antisense
AATCCTGGAATGCGATCTCCACTGC 641 167 305 Antisense
ATGCTTCTTGGTTTACGATGTTCTC 397 43 402 Antisense
AGGCAGCGCTTGGTGAGGCATGCCC 144 55 476 Antisense
GGCATGCCCCCTTTTTAATGATGAC 303 523 492 Antisense
TGATGACCTTTGTCAAGCGCTCTTC 263 567 510 Antisense
ATTCGAGGTCTTCAGGACTCTCTTG 608 9 559 Antisense
GGACTCTCTTGGTGGATTCTATGAC 345 525 573 Antisense
GACCTCATTGCTGTGCAGGGATTCC 371 383 595 Antisense
Sequence Source Affymetrix Proprietary Database